This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2018

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A Framework for Identifying and Characterising Coral Reef “Oases” against a Backdrop of Degradation, James R. Guest, Peter J. Edmunds, Ruth D. Gates, Ilsa B. Kuffner, Andreas J. Andersson, Brian Burnel Barnes, Iliana Chollett, Travis A. Courtney, Robin Elahi, and Kevin Gross

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Insights into the Biodiversity, Behavior, and Bioluminescence of Deep-Sea Organisms Using Molecular and Maritime Technology, Steven H. D. Haddock and Brad A. Seibel

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Potential Role for MicroRNA in Regulating Hypoxia-induced Metabolic Suppression in Jumbo Squids, Hanane Hadj-Moussa, Samantha M. Logan, Brad A. Seibel, and Kenneth B. Storey

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Benthic Foraminifera from the Carnarvon Ramp Reveal Variability in Leeuwin Current Activity (Western Australia) since the Pliocene, Christian Haller, Pamela Hallock, Albert C. Hine, and Christopher G. Smith

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Wetland Changes of China's Largest Freshwater Lake and Their Linkage with the Three Gorges Dam, Xingxing Han, Lian Feng, Chuanmin Hu, and Xiaoling Chen

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Hurricane-Induced Changes in the Everglades National Park Mangrove Forest: Landsat Observations Between 1985 and 2017, Xingxing Han, Lian Feng, Chuanmin Hu, and Philip Kramer

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Characterizing a Sea Turtle Developmental Habitat Using Landsat Observations of Surface-Pelagic Drift Communities in the Eastern Gulf of Mexico, Robert F. Hardy, Chuanmin Hu, Blair Witherington, Brian Lapointe, Anne Meylan, Ernst Peebles, Leo Meirose, and Shigetomo Hirama

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Generation of Red Drum (Sciaenops Ocellatus) Hematology Reference Intervals with a Focus on Identified Outliers, Kendal E. Harr, Kristina Deak, Steven A. Murawski, Drury R. Reavill, and Ryan A. Takeshita

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Trace Metals and Minor Elements in Southern Gulf of Mexico Sediments following the Ixtoc Marine Oil Blow Out Event, 2015, David W. Hastings and Thomas Bartlett

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Replacement Times of a Spectrum of Elements in the North Atlantic Based on Thorium Supply, Christopher T. Hayes, Robert F. Anderson, Hai Cheng, Tim M. Conway, R. L. Edwards, Martin Q. Fleisher, Peng Ho, Kuo-Fang Huang, Seth G. John, and William M. Landing

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Cross-Shelf Exchange Associated With the Gulf Stream in the South Atlantic Bight: Direct Observations Using an Autonomous Underwater Glider, Ruoying He, Austin C. Todd, Chad Lembke, Todd Kellison, Chris Taylor, and David A. Mann

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Deglaciation and Future Stability of the Coats Land Ice Margin, Antarctica, Dominic A. Hodgson, Kelly Hogan, James M. Smith, James A. Smith, Claus-Dieter Hillenbrand, Alastair G. C. Graham, Peter Fretwell, Claire Allen, Vicky Peck, Jan-Erik Arndt, Boris Dorschel, Christian Hübscher, Andrew M. Smith, and Robert Larter

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Pervasive Iron Limitation at Subsurface Chlorophyll Maxima of the California Current, Shane L. Hogle, Christopher L. Dupont, Brian M. Hopkinson, Andrew L. King, Kristen N. Buck, Kelly L. Roe, Rhona K. Stuart, Andrew E. Allen, Elizabeth L. Mann, Zackary I. Johnson, and Katherine A. Barbeau

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Accuracy and Precision of Tidal Wetland Soil Carbon Mapping in the Conterminous United States, James R. Holmquist, Lisamarie Windham-Myers, Norman Bliss, Stephen Crooks, James T. Morris, J. P. Megonigal, Tiffany Troxler, Donald Weller, John Callaway, Joshua L. Breithaupt, and Joseph M. Smoak

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Remote Sensing Estimation of Surface Oil Volume during the 2010 Deepwater Horizon oil Blowout in the Gulf of Mexico: Scaling up AVIRIS Observations with MODIS Measurements, Chuanmin Hu, Lian Feng, Jamie Holmes, Gregg A. Swayze, Ira Leifer, Christopher Melton, Oscar Garcia, Ian MacDonald, Mark Hess, Frank E. Muller-Karger, George Graettinger, and Rebecca Green

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Coastal Ocean and Continental Shelves, Chuanmin Hu, Frank Muller-Karger, and Lisa Robbins

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Mangrove Sediment Carbon Stocks along an Elevation Gradient: Influence of the Late Holocene Marine Regression (New Caledonia), Adrien Jacotot, Cyril Marchand, Brad E. Rosenheim, Eugene W. Domack, and Michel Allenbach

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Hard Rock Landforms Generate 130 km Ice Shelf Channels through Water Focusing in Basal Corrugations, Hafeez Jeofry, Neil Ross, Anne Le Brocq, Alastair G. C. Graham, Jilu Li, Prasad Gogineni, Mathieu Morlighem, Thomas Jordan, and Martin J. Siegert

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Integrating Larval Connectivity with Local Demography Reveals Regional Dynamics of a Marine Metapopulation, Darren W. Johnson, Mark R. Christie, Timothy J. Pusack, Christopher D. Stallings, and Mark A. Hixon

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A New Hybrid Method for Estimating Hydrologically Induced Vertical Deformation From GRACE and a Hydrological Model: An Example From Central North America, Makan A. Karegar, Timothy H. Dixon, Jurgen Kusche, and Don P. Chambers

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Discovery of Four Novel Circular Single-Stranded DNA Viruses in Fungus-Farming Termites, Mason Kerr, Karyna Rosario, Christopher C. M. Baker, and Mya Breitbart

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Fluctuating Fishing Intensities and Climate Dynamics Reorganize the Gulf of Mexico's Fisheries Resources, Joshua P. Kilborn, Michael Drexler, and David L. Jones

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Local Climatology of Fast Ice in McMurdo Sound, Antarctica, Stacy Kim, Ben Saenz, Jeff Scanniello, Kendra L. Daly, and David Ainley

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Large-Scale Intrusion of Circumpolar Deep Water on Antarctic Margin Recorded by Stylasterid Corals, Theresa M. King, Brad E. Rosenheim, Alexandra L. Post, Theresa Gabris, Taylor Burt, and Eugene W. Domack

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Characterizing Residence Patterns of North Atlantic Right Whales in the Southeastern USA with a Multistate Open Robust Design Model, A. M. Krzystan, T. A. Gowan, W. L. Kendall, J. Martin, J. G. Ortega-Ortiz, K. Jackson, A. R. Knowlton, P. Naessig, M. Zani, D. W. Schulte, and C. R. Taylor

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Zoonotic Infection With Pigeon Paramyxovirus Type 1 Linked to Fatal Pneumonia, Thijs Kuiken, Mya Breitbart, Martin Beer, Christian Grund, Dirk Höper, Bernadette van den Hoogen, Jean-Louis Kerkhoffs, and Karyna Rosario

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Core Extrusion Bulk Density/Pore Water, Northern Gulf of Mexico, November 2010 to September 2016, Rebekka A. Larson and Gregg R. Brooks

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High-Resolution Investigation of Event Driven Sedimentation: Northeastern Gulf of Mexico, Rebekka A. Larson, Gregg Brooks, Patrick Schwing, Charles W. Holmes, Savannah R. Carter, and David Hollander

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A Color-Index-Based Empirical Algorithm for Determining Particulate Organic Carbon Concentration in The Ocean From Satellite Observations, Chengfeng Le, Xueying Zhou, Chuanmin Hu, Zhongping Lee, Lin Li, and Dariusz Stramski

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Global Water Clarity: Continuing a Century-Long Monitoring, Z. Lee, R. Arnone, D. Boyce, B. Franz, S. Greb, C. Hu, S. Lavender, M. Lewis, B. Schaeffer, S. Shang, M. Wang, M. Wernand, and C. Wilson

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Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta, Brittany Leigh, Mya Breitbart, Hanna Oksanen, Dennis Bamford, and Larry Dishaw

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The Gut Virome of the Protochordate Model Organism, Ciona intestinalis Subtype A, Brittany Leigh, Anni Djurhuus, Mya Breitbart, and Larry Dishaw

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Using Three Acoustic Technologies on Underwater Gliders to Survey Fish, Chad Lembke, Susan Lowerre-Barbieri, David Mann, and Christopher J. Taylor

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Utilizing Gliders and Acoustics to Identify Fish Habitat Hotspots, Chad Lembke, David Mann, Chris Taylor, Alex Silverman, and Edmund Hughes

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Evaluation of Satellite-Derived SST Products in Identifying the Rapid Temperature Drop on the West Florida Shelf Associated with Hurricane Irma, Yonggang Liu, Robert H. Weisberg, Jason Law, and Boyin Huang

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Assessment of Offshore Oil/gas Platform Status in the Northern Gulf of Mexico Using Multi-source Satellite Time-series Images, Yongxue Liu, Chuanmin Hu, Chao Sun, Wenfeng Zhan, Shaojie Sun, Bihua Xu, and Yanzhu Dong

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Identifying Industrial Heat Sources Using Time-series of the VIIRS Nightfire Product with an Object-oriented Approach, Yongxue Liu, Chuanmin Hu, Wenfeng Zhan, Chao Sun, Brock Murch, and Lei Ma

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Incorporation of Acoustic Sensors on a Coastal Ocean Monitoring Platform for Measurements of Biological Activity, James Locascio, David Mann, Kyle Wilcox, and Mark Luther

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Long-term Spatiotemporal Variability of Southwest Florida Whiting Events from MODIS Observations, Jacqueline S. Long, Chuanmin Hu, and Mengqiu Wang

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Real Time Observations of Oceanographic and Meteorological Parameters for Maritime Transportation: Origins and Novel Applications, Mark E. Luther, Steven D. Meyers, and Jeffrey Scudder

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A Conceptual View on Inertial Internal Waves in Relation to the Subinertial Flow on the Central West Florida Shelf, Ekatrina V. Maksimova

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The METROPOLE Project – An Integrated Framework to Analyse Local Decision Making and Adaptive Capacity to Large-Scale Environmental Change: Decision Making and Adaptation to Sea Level Rise in Santos, Brazil, José A. Marengo, Frank E. Muller-Karger, Mark Pelling, and Catherine J. Reynolds

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Benthic Foraminifera as Bioindicators of Potentially Toxic Element (Pte) Pollution: Torrecillas Lagoon (San Juan Bay Estuary), Puerto Rico, Michael Martínez-Colón, Pamela Hallock, Carlos R. Green-Ruíz, and Joseph M. Smoak

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Interspecific Interactions May Influence Reef Fish Management Strategies in the Gulf of Mexico, Michelle D. Masi, Cameron H. Ainsworth, I. C. Kaplan, and M. J. Schirripa

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Rapid Coastal Forest Decline in Florida's Big Bend, Matthew J. McCarthy, Benjamin Dimmitt, and Frank E. Muller-Karger

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Impacts of 40 Years of Land Cover Change on Water Quality in Tampa Bay, Florida, Matthew J. McCarthy, Frank E. Muller-Karger, Daniel Otis, and Pablo Méndez-Lázaro

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Water Quality Drivers in 11 Gulf of Mexico Estuaries, Matthew J. McCarthy, Daniel Otis, Pablo Méndez-Lázaro, and Frank Muller-Karger

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Enabling Efficient, Large-Scale High-Spatial Resolution Wetland Mapping using Satellites, Matthew J. McCarthy, Kara R. Radabaugh, Ryan P. Moyer, and Frank Muller-Karger

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Developing Community-Based Scientific Priorities and New Drilling Proposals in the Southern Indian and Southwestern Pacific Oceans, Robert McKay, Neville Exon, Dietmar Müller, Karsten Gohl, Michael Gurnis, Amelia E. Shevenell, Stuart Henrys, Fumio Inagaki, Dhananjai Pandey, and Jessica Whiteside

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Decreased Growth and Increased Shell Disease in Early Benthic Phase Homarus Americanus in Response to Elevated CO2, Erin L. McLean, Natallia V. Katenka, and Brad A. Seibel

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The Biogeochemical Cycling of Iron, Copper, Nickel, Cadmium, Manganese, Cobalt, Lead, and Scandium in a California Current Experimental Study, Travis Mellett, Matthew T. Brown, P. Dreux Chappell, Carolyn Duckham Carolyn Duckham, Jessica N. Fitzsimmons, Claire P. Till, Robert M. Sherrell, Maria T. Maldonado, and Kristen N. Buck

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Photochemical Efficiencies of Diatom Symbionts in Hospite in Amphistegina Gibbosa (foraminifera) Across Seasons in the Florida Keys, Usa, Natasha Mendez-Ferrer, Pamela Hallock, and David L. Jones

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A Heat Vulnerability Index to Improve Urban Public Health Management in San Juan, Puerto Rico, P. Méndez-Lázaro, Frank E. Muller-Karger, Daniel B. Otis, M. J. McCarthy, and E. Rodríguez

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Who Should Pay for Climate Adaptation? Public Attitudes and the Financing of Flood Protection in Florida, Samuel Merrill, Jack Kartez, Karen Langbehn, Frank E. Muller-Karger, and Catherine J. Reynolds

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Wakes from Large Vessels and the Risk to the Shoreline Environment in Tampa Bay, Steven D. Meyers, Mark E. Luther, Gary Raulerson, Ed Sherwood, Stephanie Ringuet, Katie Conrad, and Gian Basili

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Salinity Induction of Recycling Crassulacean Acid Metabolism and Salt Tolerance in Plants of Talinum triangulare, Estefanía Montero, Ana Marta Francisco, Enrique Montes, and Ana Herrera

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Genomic Evolution, Recombination, and Inter-strain Diversity of Chelonid Alphaherpesvirus 5 From Florida and Hawaii Green Sea Turtles with Fibropapillomatosis, Cheryl Morrison, Luke Iwanowicz, Thierry Work, Elizabeth Fahsbender, Mya Breitbart, Cynthia Adams, Deb Iwanowicz, Lakyn Sanders, Mathias Ackermann, and Robert Cornman

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Essential Ocean Variables for Global Sustained Observations of Biodiversity and Ecosystem Changes, Frank E. Muller-Karger

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Satellite Sensor Requirements for Monitoring Essential Biodiversity Variables of Coastal Ecosystems, Frank E. Muller-Karger

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Linking Capacity Development to GOOS Monitoring Networks to Achieve Sustained Ocean Observation, Frank E. Muller-Karger

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Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (Eovs) and Essential Biodiversity Variables (Ebvs) Frameworks, Frank E. Muller-Karger and Enrique Montes

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Catch Data from Fish Collected throughout the Gulf of Mexico from 2011 until 2017, Steven A. Murawski

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Comparative Abundance, Species Composition, and Demographics of Continental Shelf Fish Assemblages throughout the Gulf of Mexico, Steven A. Murawski, Ernst B. Peebles, Adolfo Gracia, and John W. Tunnell Jr.

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Closing the Knowledge Gap for Ultra Deep Blowouts: Foci of the C-IMAGE Research Consortium, Steven Murawski and Gilbert Gilbert

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Mapping of Benthic Habitats in Komave, Coral Coast Using Worldview-2 Satellite Imagery, R. Naidu, Frank E. Muller-Karger, and M. McCarthy

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Subtropical Hydroclimate during Termination V (∼430-422 ka): Annual Records of Extreme Precipitation, Drought, and Interannual Variability from Santa Barbara Basin, Tiffany J. Napier, Ingrid L. Hendy, Linda A. Hinnov, Erik T. Brown, and Amelia E. Shevenell

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Ecosystem Models of Lake Victoria (East Africa): Exploring the Sensitivity of Ecosystem Effects of Fishing to Model Choice, Vianny Natugonza, Cameron Ainsworth, Erla Sturludóttir, Laban Musinguzi, Richard Ogutu-Ohwayo, Tumi Tomasson, Chrisphine Nyamweya, and Gunnar Stefansson

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Climate-Change–driven Accelerated Sea-level Rise Detected in the Altimeter Era, R. S. Nerem, B. D. Beckley, J. T. Fasullo, B. D. Hamlinigton, D. Masters, and Gary T. Mitchum

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Ocean Futures Under Ocean Acidification, Marine Protection, and Changing Fishing Pressures Explored Using a Worldwide Suite of Ecosystem Models, Erik Olsen, Isaac C. Kaplan, Cameron Ainsworth, Gavin Fay, Sarah Gaichas, Robert Gamble, Raphael Girardin, Cecilie H. Eide, and Thomas F. Ihde

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Ocean Futures Under Ocean Acidification, Marine Protection, and Changing Fishing Pressures Explored Using a Worldwide Suite of Ecosystem Models, Erik Olsen, Isaac C. Kaplan, Cameron Ainsworth, Gavin Fay, Sarah Gaichas, Robert Gamble, Raphael Girardin, Cecilie H. Eide, Thomas F. Ihde, Hem Nalini Morzaria-Luna, Kelli F. Johnson, Marie Savina-Rolland, Howard Townsend, Mariska Weijerman, Elizabeth A. Fulton, and Jason S. Link

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Oceanographic and Climatic Evolution of the Southeastern Subtropical Atlantic over the last 3.5 Ma, Benjamin Petrick, Erin L. McClymont, Kate Littler, Antoni Rosell-Melé, Matthew O. Clarkson, Mark Maslin, Ursula Röhl, Amelia E. Shevenell, and Richard D. Pancost

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Size-dependent Predation and Intraspecific Inhibition of an Estuarine Snail Feeding on Oysters, Timothy J. Pusack, J. Wilson White, Hanna G. Tillotson, David L. Kimbro, and Christopher D. Stallings

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Simulating Transport Pathways of Pelagic Sargassum from the Equatorial Atlantic into the Caribbean Sea, Nathan F. Putman, Gustavo J. Goni, Lewis J. Gramer, Chuanmin Hu, Elizabeth M. Johns, Joaquin Trinanes, and Mengqiu Wang

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Diurnal Changes of cyanobacteria Blooms in Taihu Lake as derived from GOCI Observations, Lin Qi, Chuanmin Hu, Petra M. Visser, and Ronghua Ma

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Environmental Controls on the Geochemistry of Globorotalia truncatulinoides in the Gulf of Mexico: Implications for Paleoceanographic Reconstructions, Caitlin E. Reynolds, Julie N. Richey, Jennifer S. Fehrenbacher, Brad E. Rosenheim, and Howard J. Spero

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Spatial and Temporal Variability of pCO2, Carbon Fluxes, and Saturation State on the West Florida Shelf, Lisa L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, and C. G. Smith

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Regional Acidification Trends in Florida Shellfish Estuaries: a 20+ Year Look at pH, Oxygen, Temperature, and Salinity, Lisa L. Robbins and John T. Lisle

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Spatial and Temporal Variability of pCO2, Carbon Fluxes, and Saturation State on the West Florida Shelf, L. L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, and C. G. Smith

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Decadal Assessment of Polycyclic Aromatic Hydrocarbons in Mesopelagic Fishes from the Gulf of Mexico Reveals Exposure to Oil-Derived Sources, Isabel Romero, Tracey Sutton, Brigid Carr, Ester Quintana-Rizzo, Steve W. Ross, David Hollander, and Joseph J. Torres

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Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air, Karyna Rosario, Noah Fierer, and Mya Breitbart

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Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing, Karyna Rosario, Noah Fierer, Shelly Miller, Julia Luongo, and Mya Breitbart

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Challenges in Using Celltracker Green on Foraminifers that Host Algal Endosymbionts, Benjamin J. Ross and Pamela Hallock

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Submerged Reef Terraces in the Maldivian Archipelago (Indian Ocean), Alessio Rovere, Pankaj Khanna, Carlo Nike Bianchi, André W. Droxler, Carla Morri, and David F. Naar

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Description and Mechanisms of the Mid-Year Upwelling in the Southern Caribbean Sea from Remote Sensing and Local Data, Digna T. Rueda-Roa, Tal Ezer, and Frank E. Muller-Karger

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Description and Mechanisms of the Mid-Year Upwelling in the Southern Caribbean Sea from Remote Sensing and Local Data, Digna T. Rueda-Roa, Tal Ezer, and Frank E. Muller-Karger

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The GEOTRACES Intermediate Data Product 2017, Reiner Schlitzer, Robert F. Anderson, Elena Dodas, Maeve Lohan, Walter Geibert, Alessandro Tagliabue, Kristen N. Buck, Tim Conway, Stephen Galer, and Ruifang Xie

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Sedimentary age models, benthic foraminifera, mass accumulation rates, and volcanic grain data from R/V Justo Sierra cruise in the Southern Gulf and Ixtoc I from 2015-08-03 to 2015-08-06, Patrick Schwing

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Tracing the Incorporation of Carbon into Benthic Foraminiferal Calcite Following the Deepwater Horizon Event, Patrick Schwing, Jeffrey P. Chanton, Isabel C. Romero, David Hollander, Ethan A. Goddard, Gregg R. Brooks, and Rebekka A. Larson

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Short-lived radioisotope (excess Pb210) measurements from sediment cores collected throughout the Gulf of Mexico from 2010-11-07 to 2017-07-20, Patrick Schwing and David Hollander

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Benthic foraminiferal assemblages from sediment cores collected on multiple cruises in the Gulf of Mexico from 2010-11-18 to 2017-05-22, Patrick Schwing and David J. Hollander

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Gulf-wide seafloor surface benthic foraminifera stable isotopes from sediment cores collected on multiple cruises from 2010-06-13 to 2017-07-19, Patrick Schwing and David J. Hollander

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Wageningen aquaria/microcosm experiments, benthic foraminifera assemblage and stable isotope measurements, Patrick Schwing and David J. Hollander

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Resilience of Benthic Foraminifera in the Northern Gulf of Mexico following the Deepwater Horizon Event (2011–2015), Patrick Schwing, Bryan J. O'Malley, and David Hollander

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Gulf-wide Impacts, Recovery and Connectivity of Marine Invertebrates in the Context of Oil Spills and Environmental Variability, Patrick Schwing and Yadong Wang

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Environmental Petroleum Pollution Analysis Using Ramped Pyrolysis-gas Chromatography–mass Spectrometry, Meredith Evans Seeley, Qing Wang, Hernando Bacosa, Brad E. Rosenheim, and Zhanfei Liu

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Metabolic Suppression in the Pelagic Crab, Pleuroncodes planipes, in Oxygen Minimum Zones, Brad A. Seibel, Bryan E. Luu, Shannon N. Tessier, Trisha Towanda, and Kenneth B. Storey

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Enabling a Platform for Habitat and Marine Assessment with Real Time Monitoring and Synchronous Databasing, Alex Silverman, Chad Lembke, Steven Butcher, and Steven Murawski

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New Species from the Sabrina Flora: An Early Paleogene Pollen and Spore Assemblage from the Sabrina Coast, East Antarctica, Catherine Smith, Sophie Warny, Amelia E. Shevenell, Sean P.S. Gulick, and Amy Leventer

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Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC), David J. Smith, Jayamary D. Ravichandar, Sunit Jain, Dale W. Griffin, Hongbin Yu, Qian Tan, James Thissen, Terry Lusby, Patrick Nicoll, and Sarah Shedler

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In Situ Observations of Foraminiferal Bleaching in the Maldives, Indian Ocean, Silvia Spezzaferri, Akram El Kateb, Chiara Pisapia, and Pamela Hallock