Marine Science Faculty Publications

 
This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2020

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Impacts of high pressure on hydrocarbon biodegradation, Xiaoxu Sun

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Preparing for The Inevitable: Ecological and Indigenous Community Impacts of Oil Spill-Related Mortality in The United States’ Arctic Marine Ecosystem, Paul M. Suprenand, Carie Hoover, Cameron H. Ainsworth, Lindsey N. Dornberger, and Chris J. Johnson

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Population Genomics of Three Deep-sea Cephalopod Species Reveals Connectivity Between the Gulf of Mexico and Northwestern Atlantic Ocean, L. E. Timm, H. D. Bracken-Grissom, A. Sosnowski, M. Breitbart, M. Vecchione, and H. Judkins

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Morphodynamic Modelling of the Wilderness Breach, Fire Island, New York. Part I: Model set-up and Validation, Maarten van Ormondt, Timothy R. Nelson, Cheryl J. Hapke, and Dano Roelvink

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Early Life History Growth in Fish Reflects Consumption-mortality Tradeoffs, Kelly Vasbinder and Cameron Ainsworth

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Spawning Origins and Ontogenetic Movements for Demersal Fishes: An Approach Using Eye-lens Stable Isotopes, Julie L. Vecchio and Ernst B. Peebles

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Gas chromatography–mass spectrometry (GC-MS) and Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) measurements of seafloor sediments collected aboard multiple cruises in the northern Gulf of Mexico from 2010-07-26 to 2014-06-28, Damien Weleschuk and Jagos Radovic

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CEWAF-exposed Florida pompano fish F1 generation: spawn and hatch, Dana Wetzel

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Chemically enhanced water-accommodated fraction (CEWAF) and pathogen exposed Red Snapper: Lipid Class Composition, Dana Wetzel

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Chemically enhanced water-accommodated fractions (CEWAF)- exposed Florida pompano reproduction: Thyroid Function Assays, Dana Wetzel

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Gene expression of chemically enhanced water-accommodated fraction (CEWAF) and pathogen exposed Red Snapper, Dana Wetzel

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Future Vision for Autonomous Ocean Observations, Christopher Whitt, Jay Pearlman, Brian Polagye, Frank Caimi, Frank Muller-Karger, Andrea Copping, Heather Spence, Shyam Madhusudhana, William Kirkwood, Ludovic Grosjean, Bilal Muhammad Fiaz, Satinder Singh, Sikandra Singh, Dana Manalang, Ananya Sen Gupta, Alain Maguer, Justin J. H. Buck, Andreas Marouchos, Malayath Aravindakshan Atmanand, Ramasamy Venkatesan, Vedachalam Narayanaswamy, Pierre Testor, Elizabeth Douglas, Sebastien de Halleux, and Siri Jodha Khalsa

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Ocean Deoxygenation and Copepods: Coping with Oxygen Minimum Zone Variability, Karen F. Wishner, Brad Seibel, and Dawn Outram

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Genome Sequence of Vibrio natriegens Phage vB_VnaS-AQKL99, Noah Yonas, Paige Boleman, Y Nguyen, Makenzie Kerr, Kema Malki, Anthony M. Greco, and Mya Breitbart

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Genome Sequence of Vibrio natriegens Phage vB_VnaS-AQKL99, Noah Yonas, Paige Boleman, Y Nguyen, Makenzie Kerr, Kema Malki, Anthony M. Greco, and Mya Breitbart

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Evaluation of Remote Sensing Reflectance Derived From the Sentinel-2 Multispectral Instrument Observations Using POLYMER Atmospheric Correction, Minwei Zhang and Chuanmin Hu

Submissions from 2019

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Input, output and complete run files for the Atlantis ecosystem model IXTOC oil spill simulations from Campeche Bay Atlantis model, Cameron Ainsworth

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Input, output and complete run files for the Atlantis ecosystem model Deepwater Horizon oil spill simulations including fish and invertebrate effects, Cameron Ainsworth and Lindsey N. Dornberger

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Dataset for: The use of computational fluid dynamics to predict the turbulent dissipation rate and droplet size in a stirred autoclave, Zach Aman

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Mollusk and meiofauna communities data collected onboard the R/V Weatherbird II cruise WB0517 in the northwestern margin of Cuba from 2017-05-13 to 2017-05-23, Maickel Armenteros

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Geochemical and Faunal Characterization in the Sediments off the Cuban North and Northwest Coast, Maickel Armenteros, Patrick Schwing, Rebekka Larson, Adrian Martínez-Suárez, Raúl Fernández-Garcés, David Hollander, and Gregg Brooks

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Validation of VIIRS and MODIS Reflectance Data in Coastal and Oceanic Waters: An Assessment of Methods, Brian B. Barnes, Jennifer P. Cannizzaro, David C. English, and Chuanmin Hu

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Palaeobiogeography and Evolutionary Patterns of the Larger Foraminifer Borelis de Montfort (Borelidae), Davide Bassi, Juan C. Braga, Giovanni Di Domenico, Johannes Pignatti, Sigal Abramovich, Pamela Hallock, Janine Konen, Zoltan Kovacs, Martin R. Langer, Giulio Pavia, and Yasufumi Iryu

A Response to Scientific and Societal Needs for Marine Biological Observations, Nicholas J. Bax, Patricia Miloslavich, Frank Muller-Karger, Valerie Allain, Ward Appeltans, Sonia Dawn Batten, Lisandro Benedetti-Cecchi, Pier Luigi Buttigie, Sanae Chiba, Daniel Paul Costa, J. Emmett Duffy, Daniel C. Dunn, Craig Richard Johnson, Raphael M. Kudela, David Obura, Lisa-Maria Rebelo, Yunne-Jai Shin, Samantha Elisabeth Simmons, and Peter Lloyd Tyack

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Riverine Calcium End-Members Improve Coastal Saturation State Calculations and Reveal Regionally Variable Calcification Potential, Sean Thomas Beckwith, Robert H. Byrne, and Pamela Hallock

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The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science Motive and Mission Overview, Michael J. Behrenfeld, Richard H. Moore, Chris A. Hostetler, Jason Graff, Peter Gaube, Lynn M. Russell, Gao Chen, Scott C. Doney, Stephen Giovannoni, Hongyu Liu, Christopher Proctor, Luis M. Bolaños, Nicholas Baetge, Cleo Davie-Martin, Toby K. Westberry, Timothy S. Bates, Thomas G. Bell, Kay D. Bidle, Emmanuel S. Boss, Sarah D. Brooks, Brian Cairns, Craig Carlson, Kimberly Halsey, Elizabeth L. Harvey, Chuanmin Hu, Lee Karp-Boss, Mary Kleb, Susanne Menden-Deuer, Françoise Morison, Patricia K. Quinn, Amy Jo Scarino, Bruce Anderson, Jacek Chowdhary, Ewan Crosbie, Richard Ferrare, Johnathan W. Hair, Yongxiang Hu, Scott Janz, Jens Redemann, Eric Saltzman, Michael Shook, David A. Siegel, Armin Wisthaler, Melissa Yang Martin, and Luke Ziemba

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Predicting the Impact of Future Oil-spill Closures on Fishery-dependent Communities—a Spatially Explicit Approach, Igal Berenshtein, Shay O’Farrell, Natalie Perlin, James N. Sanchirico, Steven A. Murawski, Larry Perruso, and Claire B. Paris

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Metabolic Adaptations of the Pelagic Octopod Japetella diaphana to Oxygen Minimum Zones, Matthew A. Birk, K.A.S. Mislan, Karen F. Wishner, and Brad A. Seibel

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Evaluation of Evapotranspiration Variations as a Function of Relief and Terrain Exposure through Multivariate Statistical Analysis, R. W. Bosquilia, C. M.U Neale, S. N. Duarte, S. J. Longhi, S. D. Ferraz, Frank E. Muller-Karger, and M. J. McCarthy

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Evaluation of Evapotranspiration Variations According to Soil Type Using Multivariate Statistical Analysis, R. W. Bosquilia, C. M. U Neale, S. N. Duarte, S. J. Longhi, S. FD Ferraz, and Frank E. Muller-Karger

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Bulk density/porewater data from sediment cores collected onboard R/V Weatherbird II cruises WB-0815 and WB-0915 in the Gulf of Mexico from 2015-08-16 to 2015-10-01, Gregg Brooks and Rebekka Larson

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Bulk density/porewater data from sediment cores collected onboard R/V Weatherbird II cruise WB-0814 in the Gulf of Mexico from 2014-08-14 to 2014-08-28, Gregg Brooks and Rebekka Larson

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Bulk density/porewater data from sediment cores collected onboard R/V Weatherbird II cruise WB-0915 and R/V Justo Sierra cruise JS-0815 in the southern Gulf of Mexico from 2015-07-30 to 2015-09-29, Gregg Brooks and Rebekka Larson

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Photographs of sediment cores collected aboard R/V Weatherbird II cruise WB-0517 off the coast of Cuba in the Gulf of Mexico from 2017-05-11 to 2017-05-23, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-0717 and WB-1217 in the Gulf of Mexico from 2017-07-19 to 2017-12-05, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-0812 and WB-1012 and R/V Pelican cruise PE12-22 in the northern Gulf of Mexico from 2012-04-09 to 2012-10-18, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-0813 and WB-1405 in the northern Gulf of Mexico from 2013-08-15 to 2013-09-27, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-0815 and WB-0915 in the northern Gulf of Mexico from 2015-08-16 to 2015-10-01, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-0911, WB-1125 and WB-1114 in the northern Gulf of Mexico from 2011-02-20 to 2011-09-27, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruises WB-2010-08, WB-1109 and WB-1110 in the northern Gulf of Mexico from 2010-08-11 to 2010-12-09, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruise WB-0814 in the northern Gulf of Mexico from 2014-08-14 to 2014-08-28, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruise WB-0816 in the Gulf of Mexico from 2016-08-05 to 2016-09-09, Gregg Brooks and Rebekka Larson

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Sediment core photographs collected aboard R/V Weatherbird II cruise WB-0915 and R/V Justo Sierra cruise JS-0815 in the southern Gulf of Mexico from 2015-07-30 to 2015-09-29, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Justo Sierra cruise JS-0815 in the southern Gulf of Mexico from 2015-08-01 to 2015-08-06, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruises WB-0812 and WB-1012 and R/V Pelican cruise PE12-22 in the northern Gulf of Mexico from 2012-04-09 to 2012-10-18, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruises WB-0911, WB-1125 and WB-1114 in the northern Gulf of Mexico from 2011-02-20 to 2011-09-26, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruises WB-2010-08, WB-1109 and WB-1110 in the northern Gulf of Mexico from 2010-08-11 to 2010-12-09, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruise WB-0813 in the northern Gulf of Mexico from 2013-08-20 to 2013-08-21, Gregg Brooks and Rebekka Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruise WB-0814 in the northern Gulf of Mexico from 2014-08-14 to 2014-08-19, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruises WB-0812 and WB-1012 and R/V Pelican cruise PE12-22 in the northern Gulf of Mexico from 2012-04-09 to 2012-10-18, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruises WB-0815 and WB-0915 in the northern Gulf of Mexico from 2015-08-16 to 2015-10-01, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruises WB-0911, WB-1114 and WB-1125 in the northern Gulf of Mexico from 2011-02-20 to 2011-09-27, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruises WB-2010-08, WB-1109 and WB-1110 in the northern Gulf of Mexico from 2010-08-11 to 2010-12-09, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected R/V Weatherbird II cruises WB-0813 and WB-1405 in the northern Gulf of Mexico from 2013-08-16 to 2013-09-27, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected R/V Weatherbird II cruise WB-0814 in the northern Gulf of Mexico from 2014-08-14 to 2014-08-28, Gregg Brooks and Rebekka Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruise WB-0717 in the Gulf of Mexico from 2017-07-22 to 2017-07-28, Gregg R. Brooks and Rebekka Larson

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Bulk density and porewater data collected onboard R/V Weatherbird II cruise WB-0816 and field expeditions in the Gulf of Mexico from 2016-08-05 to 2016-09-09, Gregg R. Brooks and Rebekka A. Larson

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Bulk density/porewater data from sediment cores collected onboard R/V Weatherbird II cruises WB-0717 and WB-1217 in the Gulf of Mexico from 2017-07-19 to 2017-12-05, Gregg R. Brooks and Rebekka A. Larson

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Bulk density/porewater data from sediment cores collected onboard R/V Weatherbird II cruise WB-0812 in the northern Gulf of Mexico from 2012-08-14 to 2012-08-16, Gregg R. Brooks and Rebekka A. Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruise WB-0717 in the Gulf of Mexico from 2017-07-22 to 2017-07-28, Gregg R. Brooks and Rebekka A. Larson

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Sediment texture and composition data collected aboard R/V Weatherbird II cruise WB-0816 in the Gulf of Mexico from 2016-09-08 to 2016-09-09, Gregg R. Brooks and Rebekka A. Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruise WB-0816 in the Gulf of Mexico from 2016-08-14 to 2016-09-09, Gregg R. Brooks and Rebekka A. Larson

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Bulk density and porewater data collected onboard R/V Weatherbird II cruises WB-0813 and WB-1405 in the northern Gulf of Mexico from 2013-08-15 to 2013-09-27, Gregg R. Brooks and Rebekka A. Larson

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Bulk Density/Porewater of sediment cores collected aboard R/V Weatherbird II cruise WB-0517 in the Gulf of Mexico from 2017-05-11 to 2017-05-23, Gregg R. Brooks and Rebekka A. Larson

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Sediment texture & composition data collected aboard R/V Weatherbird II cruise WB-0517 in the Gulf of Mexico from 2017-05-11 to 2017-05-23, Gregg R. Brooks and Rebekka A. Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Justo Sierra cruise JS-0815 in the southern Gulf of Mexico from 2015-07-31 to 2015-08-08, Gregg R. Brooks and Rebekka A. Larson

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Short-lived radioisotope (SLRad) data collected aboard R/V Weatherbird II cruise WB-0517 in the Gulf of Mexico from 2017-05-11 to 2017-05-23, Gregg R. Brooks, Rebekka A. Larson, and Patrick Schwing

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Gulf of Mexico (GoM) Bottom Sediments and Depositional Processes: A Baseline for Future Oil Spills, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Arne R. Diercks, Maickel Armenteros, Misael Diaz-Asencio, Joan-Albert Sanchez-Cabeza, Ana C. Ruiz-Fernandez, Juan Carlos Herguera, Libia H. Pérez-Bernal, and David Hollander

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DNA Barcoding Reveals Clear Delineation Between Spawning Sites for Neritic Versus Oceanic Fishes in the Gulf of Mexico, Makenzie Burrows, Jeremy Browning, Mya Breitbart, Steven Murawski, and Ernst Peebles

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Observing Changes in Ocean Carbonate Chemistry: Our Autonomous Future, Seth M. Bushinsky, Yuichiro Takeshita, and Nancy L. Williams

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Remote Detection of Cyanobacteria Blooms in an Optically Shallow Subtropical Lagoonal Estuary Using MODIS Data, Jennifer P. Cannizzaro, Brian B. Barnes, Chuanmin Hu, Alina A. Corcoran, Katherine A. Hubbard, Eric Muhlbach, William C. Sharp, Larry E. Brand, and Christopher R. Kelble

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Time of Detection as a Metric for Prioritizing Between Climate Observation Quality, Frequency, and Duration, B. R. Carter, N. L. Williams, W. Evans, A. J. Fassbender, L. Barbero, C. Hauri, R. A. Feely, and A. J. Sutton

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Observational Requirements for Long-Term Monitoring of the Global Mean Sea Level and Its Components Over the Altimetry Era, Anny Cazenave; Ben Hamlington; Martin Horwath; Valentina R. Barletta; Jérôme Benveniste; Don Chambers; Petra Döll; Anna E. Hogg; Jean François Legeais; Mark Merrifield; Benoit Meyssignac; Garry Mitchum; Steve Nerem; Roland Pail; Hindumathi Palanisamy; Frank Paul; Schuckmann, Karina von Schuckmann; and Philip Thompson

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Environmental Controls of Surface Water pCO2 in Different Coastal Environments: Observations from Marine Buoys, Shuangling Chen and Chuanmin Hu

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A Machine Learning Approach to Estimate Surface Ocean PCO2 from Satellite Measurements, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Rik Wanninkhof, Wei-Jun Cai, Leticia Barbero, and Denis Pierrot

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Improving Ocean Color Data Coverage through Machine Learning, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Yuyuan Xie, Gong Lin, and Zhongfeng Qiu

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Statistical Simulation of Ocean Current Patterns Using Autoregressive Logistic Regression Models: a Case Study in the Gulf of Mexico, Helios Chiri, Ana J. Abascal, Sonia Castanedo, José A. A. Antolínez, Yonggang Liu, Robert H. Weisberg, and Raul Medina

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Resilience of a Commercial Fishing Fleet Following Emergency Closures in the Gulf of Mexico, Marcy L. Cockrell, Shay O’Farrell, James Sanchirico, Steven A. Murawski, Larry Perruso, and Andrew Strelcheck

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Evaluation of Florida Stone Crab Life History and Management Scenarios using Spawning Potential Ratios, Claire E. Crowley, David Chagaris, Ryan L. Gandy, and Kendra L. Daly

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Fecundity Assessment of Stone Crabs in the Eastern Gulf of Mexico, Claire E. Crowley, Colin P. Shea, Ryan L. Gandy, and Kendra L. Daly

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Age, growth, and condition of invasive lionfish in the northern Gulf of Mexico from 2013-03-30 to 2017-10-30, Kristen Dahl and William Patterson

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Enhanced Glacial Discharge from the Eastern Antarctic Peninsula since the 1700s Associated with a Positive Southern Annular Mode, W. A. Dickens, G. Kuhn, M. J. Leng, Alastair G. C. Graham, J. A. Dowdeswell, M. P. Meredith, C.-D. Hillenbrand, D. A. Hodgson, S. J. Roberts, H. Sloane, and J. A. Smith

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Aragonite Dissolution Kinetics and Calcite/aragonite Ratios in Sinking and Suspended Particles in the North Pacific, Sijia Dong, William M. Berelson, Nick E. Rollins, Adam V. Subhas, John D. Naviaux, Aaron J. Celestian, Xuewu Liu, Nitya Turaga, Nathaniel J. Kemnitz, Robert H. Byrne, and Jess F. Adkins

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Coral Reef Geomorphology of the Spratly Islands: A Simple Method Based on Time-Series of Landsat-8 Multi-Band Inundation Maps, Yanzhu Dong, Yongxue Liu, Chuanmin Hu, and Bihua Xu

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Keeping an Eye on Antarctic Ice Sheet Stability, Carlota Escutia, Robert M. DeConto, Robert Dunbar, Laura De Santis, Amelia E. Shevenell, and Timothy Naish

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Zonal Jets in the Laboratory: Experiments with Electromagnetically Forced Flows, Stefania Espa, Gabriella Di Nitto, Boris Galperin, and Jesse Hoemann

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Population Dynamics of Pinfish in the Eastern Gulf of Mexico (1998-2016), Meaghan E. Faletti, Dinorah H. Chacin, Jonathan A. Peake, Timothy C. MacDonald, and Christopher D. Stallings

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Carbon Cycling in the North American Coastal Ocean: A Synthesis, Katja Fennel, Simone Alin, Leticia Barbero, Wiley Evans, Timothée Bourgeois, Sarah Cooley, Frank E. Muller-Karger, and Lisa Robbins

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The world of jets, Boris Galperin and Peter L. Read

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Zonal Jets: Phenomenology, Genesis, and Physics, Boris Galperin and Peter L. Read

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Turbulence, Diffusion and Mixing Barriers in Flows with Zonal Jets, Boris Galperin, Semion Sukoriansky, Stefania Espa, Guglielmo Lacorata, Nadejda Dikovskaya, and Jesse Hoemann

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Barotropic and Zonostrophic Turbulence, Boris Galperin, Semion Sukoriansky, Roland M. Young, Rei Chemke, Yohai Kaspi, Peter L. Read, and Nadejda Dikovskaya

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Gut content data from reef fishes sampled at natural reefs sites in the northern Gulf of Mexico from 2010-11-09 to 2017-11-02, Miaya Glabach

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Stable isotope data from reef fish collected at natural reefs sites in the northern Gulf of Mexico from 2015-08-30 to 2015-11-03, Miaya Glabach

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Polycyclic aromatic hydrocarbon (PAH) data from reef fish collected at natural reefs sites in the northern Gulf of Mexico from 2015-08-30 to 2017-11-02, Miaya Glabach and Isabel Romero

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ENSO-induced Co-variability of Salinity, Plankton Biomass and Coastal Currents in the Northern Gulf of Mexico, Fabian A. Gomez, Sang-Ki Lee, Frank J. Hernandez, Luciano M. Chiaverano, Frank E. Muller-Karger, Yanyun Liu, and John T. Lamkin

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Molecular Approaches for an Operational Marine Biodiversity Observation Network, Kelly D. Goodwin, Frank E. Muller-Karger, Anni Djurhuus, Lisa Zeigler Allen, Andrew E. Allen, John P. McCrow, and Gabrielle Canonico Hyde

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Bubble Farming: Scalable Microcosms for Diatom Biofuel and the Next Green Revolution, Richard Gordon, Clifford R. Merz, Shawn Gurke, and Benoît Schoefs