Marine Science Faculty Publications

 
This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2017

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Environmental Factors Correlated with Culturable Enterococci Concentrations in Tropical Recreational Waters: a Case Study in Escambron Beach, San Juan, Puerto Rico, A. E. Laureano-Rosario, E. M. Symonds, Digna Rueda-Roa, Daniel B. Otis, and Frank E. Muller-Karger

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Satellite Observation of Particulate Organic Carbon Dynamics on the Louisiana Continental Shelf, Chengfeng Le, John C. Lehrter, Chuanmin Hu, Hugh MacIntyre, and Marcus W. Beck

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The Development of a Non-linear Autoregressive Model with Exogenous Input (NARX) to Model Climate-water Clarity Relationships: Reconstructing a Historical Water Clarity Index for the Coastal Waters of the Southeastern USA, Cameron C. Lee, Scott C. Sheridan, Brian B. Barnes, Chuanmin Hu, Douglas E. Pirhalla, Varis Ransibrahmanakul, and Karsten Shein

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Isolation and Characterization of a Shewanella Phage–Host System from the Gut of the Tunicate, Ciona intestinalis, Brittany Leigh, Charlotte Karrer, John P. Cannon, Mya Breitbart, and Larry J. Dishaw

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The Camera-Based Assessment Survey System (C-BASS): A Towed Camera Platform for Reef Fish Abundance Surveys and Benthic Habitat Characterization in the Gulf of Mexico, Chad Lembke, Sarah Grasty, Alex Silverman, Heather Broadbent, Steven Butcher, and Steven Murawski

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Recovering Low Quality MODIS-Terra Data Over Highly Turbid Waters through Noise Reduction and Regional Vicarious Calibration Adjustment: A Case Study in Taihu Lake, Junsheng Li, Chuanmin Hu, Qian Shen, Brian Burnel Barnes, Brock Murch, Lian Feng, Minwei Zhang, and Bing Zhang

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Data Return Aspects of CODAR and WERA High-Frequency Radars in Mapping Currents, Yonggang Liu, Clifford R. Merz, Robert H. Weisberg, Benjamin O'Loughlin, and Vembu Subramanian

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Nearshore Sediment Thickness, Fire Island, New York, Stanley D. Locker, Jennifer L. Miselis, Noreen A. Buster, Cheryl J. Hapke, Heidi M. Wadman, Jesse E. McNinch, Arnell S. Forde, and Chelsea A. Stalk

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Optical and Biochemical Properties of a Southwest Florida Whiting Event, Jacqueline S. Long, Chuanmin Hu, Lisa L. Robbins, Robert H. Byrne, John H Paul, and Jennifer L. Wolny

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Climate Change Impacts on Florida’s Fisheries and Aquaculture Sectors and Options for Adaptation, Kai Lorenzen, Cameron H. Ainsworth, Shirley M. Baker, Luiz R. Barbieri, Edward V. Camp, Jason R. Dotson, and Sarah E. Lester

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Spatial Variability in Factors that Control the Sinking Flux of Organic and Inorganic Particles in the Cariaco Basin: a Vision from Space, Laura Lorenzoni, Digna Rueda, Enrique Montes, R. Varela, J. Rojas, L. Guzman, Y. Astor, and Frank E. Muller-Karger

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A Simple, Fast, and Reliable Method to Predict Sargassum Washing Ashore in the Lesser Antilles, Jean-Philippe Maréchal, Claire Hellio, and Chuanmin Hu

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Carbon Regeneration in the Cariaco Basin, Venezuela, Arístides Marquez, Andrew Dale, Luis Troccoli Ghinaglia, Fabiola López Monroy, William Senior, Aida Ríos, Frank Muller Karger, Yrene Astor, and Ramón Varela

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Temporal Variability in Potentially Toxic Elements (Pte'S) and Benthic Foraminifera in an Estuarine Environment in Puerto Rico, Michael Martinez-Colon, Pamela Hallock, Carlos Green-Ruíz, and Joseph M. Smoak

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Using a Gulf of Mexico Atlantis Model to Evaluate Ecological Indicators for Sensitivity to Fishing Mortality and Robustness to Observation Error, M. D. Masi

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Using a Gulf of Mexico Atlantis Model to Evaluate Ecological Indicators for Sensitivity to Fishing Mortality and Robustness to Observation Error, M. D. Masi, C. H. Ainsworth, and D. L. Jones

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Winds on the West Florida Shelf: Regional Comparisons between Observations and Model Estimates, Dennis A. Mayer, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Satellite Remote Sensing for Coastal Management: a Review of Successful Applications, M. J. McCarthy, K. E. Colna, M. M. El-Mezayen, A. E. Laureano-Rosario, P. Méndez-Lázaro, Daniel B. Otis, G. Toro-Farmer, M. Vega-Rodriguez, and Frank E. Muller-Karger

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Dataset for: Toxicity and Mutagenicity of the Gulf of Mexico Waters during and after the Deepwater Horizon Oil Spill, July 2010-August 2013, Lauren McDaniel

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Development of a marine compatible biological assay for mutagenic compounds, Lauren McDaniel

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Fish Exposure Studies: Associated water, sediment and food microbiology and mutagenic potential, Lauren McDaniel

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Microalgae Bioproduction – Feeds, Foods, Nutraceuticals, and Polymers, Clifford R. Merz and Kevan L. Main

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Changes in Residence Time due to Large-Scale Infrastructure in a Coastal Plain Estuary, Steven D. Meyers, Amanda J. Moss, and Mark E. Luther

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Estimating Particulate Inorganic Carbon Concentrations of the Global Ocean From Ocean Color Measurements Using a Reflectance Difference Approach, C. Mitchell, C. Hu, B. Bowler, D. Drapeau, and W. M. Balch

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Sea Level Rise, Gary Mitchum, Andrea Dutton, Don P. Chambers, and Shimon Wdowinski

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Dynamics of Larger Benthic Foraminiferal Populations in the Upper Florida Keys Reef Tract, USA: Comparisons with other Coral Reef Bioindicators, Elizabeth F. Moses, Pamela Hallock, and John E. Fauth

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Projections of Future Habitat Use by Atlantic Bluefin Tuna: Mechanistic Vs. Correlative Distribution Models, B. A. Muhling, R. Brill, J. T. Lamkin, M. A. Roffer, S. K. Lee, Y. Liu, and Frank E. Muller-Karger

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Monitoring Biodiversity Change through Effective Global Coordination, Frank E. Muller-Karger

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Spectroscopy for Global Observation of Coastal and Inland Aquatic Habitats, Frank E. Muller-Karger

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A Globally Deployable Strategy for Co-Development of Adaptation Preferences to Sea-Level Rise: the Public Participation Case of Santos, Brazil, Frank E. Muller-Karger and Catherine J. Reynolds

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Megaregions Among the Large Marine Ecosystems of the Americas, Frank E. Muller-Karger, Digna Rueda-Roa, F. P. Chavez, M. T. Kavanaugh, and M. A. Roffer

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CARIACO Datasets, Frank Muller-Karger and Digna Rueda

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Response of Marginopora vertebralis (Foraminifera) from Laucala Bay, Fiji, to Changing Ocean pH, Roselyn Naidu, Pamela Hallock, Jonathan Erez, and Matakite Maata

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Monitoring Biodiversity Change through Effective Global Coordination, Laetitia M. Navarro, Néstor Fernández, Carlos Guerra, Rob Guralnick, W Daniel Kissling, Maria Cecilia Londoño, Frank Muller-Karger, Eren Turak, Patricia Balvanera, Mark J. Costello, Aurelie Delavaud, GY El Serafy, Simon Ferrier, Ilse Geijzendorffer, Gary N. Geller, Walter Jetz, Eun-Shik Kim, HyeJin Kim, Corinne S. Martin, Melodie A. McGeoch, Tuyeni H. Mwampamba, Jeanne L. Nel, Emily Nicholson, Nathalie Pettorelli, Michael E. Schaepman, Andrew Skidmore, Isabel Sousa Pinto, Sheila Vergara, Petteri Vihervaara, Haigen Xu, Tetsukazu Yahara, Mike Gill, and Henrique M. Pereira

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Improving Detection of Short-duration Fishing Behaviour in Vessel Tracks by Feature Engineering of Training Data, Shay O’Farrell, James N. Sanchirico, Iliana Chollett, Marcy Cockrell, Steven A. Murawski, Jordan T. Watson, Alan Haynie, Andrew Strelcheck, and Larry Perruso

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Assessment of Fe(III) and Eu(III) Complexation by Silicate in Aqueous Solutions, James T. Patten and Robert H. Byrne

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Remote Sensing of Bottom Pressure from GRACE Satellites, Cecilia Peralta-Ferriz, Felix W. Landerer, Don P. Chambers, Denis Volkov, and William Llovel

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Assessing Coral Reef Health in the North Ari Atoll (Maldives) Using the FoRAM Index, Chiara Pisapia, Pamela Hallock, and Silvia Spezzaferri

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Thoughts on Improving Innovation: What Are the Characteristics of Innovation and How Do We Cultivate Them?, Victor Poirier, Lyle H. Schwartz, David Eddy, Richard Berman, Selim Chacour, James Wynne, William Cavanaugh, Dean F. Martin, Robert Byrne, and Paul R. Sanberg

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Genome Sequence of Euphorbia mosaic virus from Passionfruit and Euphorbia heterophylla in Florida, J. E. Polston, M. A. Londoño, A. L. Cohen, M. Padilla-Rodriguez, K. Rosario, and Mya Breitbart

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Reef Building and Carbonate Production Modes in the West-Central Tethys during the Cenozoic, Luis Pomar, Juan I. Baceta, Pamela Hallock, Guillem Mateu-Vicens, and Daniela Basso

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Environmental Drivers of Benthic Communities and Habitat Heterogeneity on an East Antarctic Shelf, Alexandra L. Post, Caroline Lavoie, Eugene W. Domack, Amy Leventer, Amelia E. Shevenell, Alexander D. Fraser, and NBP 14-02 SCIENCE TEAM

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An Ice Sheet Model Validation Framework for the Greenland Ice Sheet, Stephen F. Price, Matthew J. Hoffman, Jennifer A. Bonin, Ian M. Howat, Thomas Neumann, Jack Saba, Irina Tezaur, Jeffrey Guerber, Don P. Chambers, Katherine J. Evans, Joseph H. Kennedy, Jan Lenaerts, William H. Lipscomb, Mauro Perego, Andrew G. Salinger, Raymond S. Tuminaro, Michiel R. van den Broeke, and Sophie M. Nowicki

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Species Specific Metabolic Capacity of Naphthalene and Phenanthrene in Three Species of Marine Teleosts Exposed to Deepwater Horizon Crude Oil, Erin Pulster

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Species-Specific Metabolism of Naphthalene and Phenanthrene in 3 Species of Marine Teleosts Exposed to Deepwater Horizon Crude Oil, Erin Pulster, Kevan Main, Dana Wetzel, and Steven Murawski

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VIIRS Captures Phytoplankton Vertical Migration in the NE Gulf of Mexico, Lin Qi, Chuanmin Hu, Brian B. Barnes, and Zhongping Lee

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Floating Algae Blooms in the East China Sea, Lin Qi, Chuanmin Hu, Mengqiu Wang, Shaoling Shang, and Cara Wilson

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Requirement of Minimal Signal-to-noise Ratios of Ocean Color Sensors and Uncertainties of Ocean Color Products, Lin Qi, Zhongping Lee, Chuanmin Hu, and Menghua Wang

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Interpreting the Role of Ph on Stable Isotopes in Large Benthic Foraminifera, L. L. Robbins, P. O. Knorr, J. G. Wynn, Pamela Hallock, and P. J. Harries

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Time series of northern Gulf of Mexico hydrocarbon data, 2010-2013, Isabel C. Romero

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Large-Scale Deposition of Weathered Oil in the Gulf of Mexico Following a Deep-Water Oil Spill, Isabel Romero, Gerardo Toro-Farmer, Arne R. Diercks, Patrick Schwing, Frank E. Muller-Karger, Steven Murawski, and David Hollander

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Virus Discovery in All Three Major Lineages of Terrestrial Arthropods Highlights the Diversity of Single-stranded DNA Viruses Associated with Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, and Mya Breitbart

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Spatial Variability of Spanish Sardine (Sardinella Aurita) Abundance as Related to the Upwelling Cycle Off the Southeastern Caribbean Sea, Digna Rueda-Roa, Jeremy Mendoza, Frank E. Muller-Karger, Juan José Cárdenas, Alina Achury, and Yrene Astor

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The Acceleration of Dissolved Cobalt's Ecological Stoichiometry due to Biological Uptake, Remineralization, and Scavenging in the Atlantic Ocean, Mak A. Saito, Abagail E. Noble, Nicholas Hawco, Benjamin S. Twining, Daniel C. Ohnemus, Seth G. John, Phoebe Lam, Tim M. Conway, Rod Johnson, Dawn Moran, and Matthew McIlvin

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Justo Sierra Cruise Sample Data, southern Gulf of Mexico, 2015, Patrick Schwing

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Northern Gulf of Mexico Benthic and Planktic Foraminifera Taxonomy, 2011-2015, Patrick Schwing

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Northern Gulf of Mexico Pb-210 Inventories, 2010-2013, Patrick Schwing

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Weatherbird II Sediment Cruise Sample Data 2015, Patrick Schwing

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Constraining the Spatial Extent of Marine Oil Snow Sedimentation and Flocculent Accumulation Following the Deepwater Horizon Event Using an Excess 210Pb Flux Approach, Patrick Schwing, Greg Brooks, Rebecca Larson, C. W. Holmes, Bryan J. O'Malley, and David Hollander

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Cruises R/V Endeavor (EN505) and R/V Weatherbird II (WB1205) Gulf of Mexico Water Chemistry (Spring 2012), Patrick Schwing and Jeff Chanton

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Gulf of Mexico Benthic and Planktic Foraminifera Carbon Isotopes, 2015, Patrick Schwing and Jeff Chanton

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Impacts and Recovery of Benthic Marine Environments in the Aftermath of the DWH Event, Patrick Schwing, David Hollander, Paul Montagna, and Peter Santschi

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Weatherbird II Sediment Cruise Sample Data (2016), Patrick Schwing and Steven Murawski

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Characterizing the Variability of Benthic Foraminifera in the Northeastern Gulf of Mexico following the Deepwater Horizon Event (2010-2012), Patrick Schwing, Bryan J. O'Malley, Isabel C. Romero, M Martínez-Colón, D. W. Hastings, M. A. Glabach, E. M. Hladky, Anthony M. Greco, and David Hollander

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Sensing an Intense Phytoplankton Bloom in the Western Taiwan Strait from Radiometric Measurements on a UAV, Shaoling Shang, Zhongping Lee, Gong Lin, Chuanmin Hu, Lianghai Shi, Yongnian Zhang, Xueding Li, Jingyu Wu, and Jing Yan

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Spectrophotometric Determination of Carbonate Ion Concentrations: Elimination of Instrument-Dependent Offsets and Calculation of In Situ Saturation States, Jonathan D. Sharp, Robert H. Byrne, Xuewu Liu, Richard A. Feely, Erin E. Cuyler, Rik Wanninkhof, and Simone R. Alin

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Virus Taxonomy in the Age of Metagenomics, Peter Simmonds, Mike Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, and Eric Carstens

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Europium Silicate Complexation at 25 °C and 0.7 Molar Ionic Strength, Alan L. Soli and Robert H. Byrne

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Southward Flow on the Western Flank of the Florida Current, Alexander V. Soloviev, Amy Hirons, Christopher Maingot, Cayla W. Dean, Richard E. Dodge, Alexander E. Yankovsky, Jon Wood, Robert H. Weisberg, Mark E. Luther, and Julian P. McCreary

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Characterization of Karenia Brevis Blooms on the West Florida Shelf Using Ocean Color Satellite Imagery: Implications for Bloom Maintenance and Evolution, I. M. Soto, Frank E. Muller-Karger, Chuanmin Hu, and J. Wolny

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The Periodic Topography of Ice Stream Beds: Insights from the Fourier Spectra of Mega-scale Glacial Lineations, Matteo Spagnolo, Timothy C. Bartholomaus, Chris D. Clark, Chris R. Stokes, Nigel Atkinson, Julian A. Dowdeswell, Jeremy C. Ely, Alastair G. C. Graham, Kelly A. Hogan, Edward C. King, Robert D. Larter, Stephen J. Livingstone, and Hamish D. Pritchard

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Biodiversity Effects of the Predation Gauntlet, Adrian C. Stier, Christopher D. Stallings, Jameal F. Samhouri, Mark A. Albins, and Glenn R. Almany

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Copper Toxicity Response Influences Mesotrophic Synechococcus Community Structure, Rhona K. Stuart, Randelle Bundy, Kristen N. Buck, Majid Ghassemain, Kathy Barbeau, and Brian Palenik

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Reef Calcifiers Are Adapted to Episodic Heat Stress but Vulnerable to Sustained Warming, Marleen Stuhr, Claire E. Reymond, Vera Rieder, Pamela Hallock, Jörg Rahnenführer, Hildegard Westphal, and Michal Kucera

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Sub-ice Shelf Sediment Geochronology Utilizing Novel Radiocarbon Methodology for Highly Detrital Sediments, C. Subt, H. I. Yoon, K. C. Yoo, J. I. Lee, A. Leventer, Eugene W. Domack, and Brad E. Rosenheim

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Remote-Sensing Estimation of Phytoplankton Size Classes From GOCI Satellite Measurements in Bohai Sea and Yellow Sea, Deyong Sun, Yu Huan, Zhongfeng Qiu, Chuanmin Hu, Shengqiang Wang, and Yijun He

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Deepwater Horizon incident oil slick morphology determined from United States Geological Survey oil volume product, May 17 2010, Shaojie Sun

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Ixtoc-I oil spill footprints derived from Coastal Zone Color Scanner and Landsat/MSS imagery, Shaojie Sun

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Sun glint critical angle oil detection, Shaojie Sun

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Trophodynamic Effects of Climate Change-induced Alterations to Primary Production along the Western Antarctic Peninsula, Paul Mark Suprenand and Cameron H. Ainsworth

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Microbial Source Tracking in Shellfish Harvesting Waters in the Gulf of Nicoya, Costa Rica, Erin M. Symonds, Suzanne Young, M. E. Verbyla, S. M. McQuaig-Ulrich, E. Ross, Juan Jimenez, Valerie J. Harwood, and Mya Breitbart

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The Integral Role of Iron in Ocean Biogeochemistry, Alessandro Tagliabue, Andrew R. Bowie, Philip W. Boyd, Kristen N. Buck, Kenneth S. Johnson, and Mak A. Saito

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Echosounder for Biological Surveys Using Ocean Gliders, J. Christopher Taylor and Chad Lembke

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Sea Level Variability and Change, P. R. Thompson, M. A. Merrifield, E. Leuliette, W. Sweet, D. P. Chambers, B. D. Hamlington, S. Jevrejeva, J. J. Mara, G. T. Mitchum, and R. S. Nerem

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Life-history Studies by Non-lethal Sampling: Using Microchemical Constituents of Fin Rays as Chronological Recorders, O. E. Tzadik, E. B. Peebles, and C. D. Stallings

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Chemical Archives in Fishes Beyond Otoliths: A Review on the Use of Other Body Parts as Chronological Recorders of Microchemical Constituents for Expanding Interpretations of Environmental, Ecological, and Life-history Changes, Orian E. Tzadik, Joseph S. Curtis, Jennifer E. Granneman, Benjamin N. Kurth, Timothy J. Pusack, Amy A. Wallace, David J. Hollander, Ernst B. Peebles, and Christopher D. Stallings

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The Effects of Spatial Scale on Assigning Nursery Habitats in Atlantic Goliath Groupers (Epinephelus Itajara) Using Non-lethal Analyses of Fin Rays, Orian E. Tzadik, David L. Jones, Ernst B. Peebles, Christopher C. Koenig, and Christopher D. Stallings

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Differential Habitat Use of Reef Fishes on a Shelf-edge Reef off La Parguera, Puerto Rico, Orian E. Tzadik, Joshua P. Kilborn, and Richard Appeldoorn

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Short Organic Carbon Turnover Time and Narrow 14C Age Spectra in Early Holocene wetland Paleosols, Lael Vetter, Brad E. Rosenheim, Alvaro Fernandez, and Torbjörn E. Törnqvist

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Stable and Radiocarbon Isotopic Composition of Dissolved Organic Matter in the Gulf of Mexico, B. D. Walker, E. R. M. Druffel, J. Kolasinski, B. J. Roberts, X. Xu, and B. E. Rosenheim

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Mapping the Soundscape Off the SoutheasternUSA by Using Passive Acoustic Glider Technology, Carrie C. Wall, David A. Mann, Chad Lembke, Chris Taylor, Ruoying He, and Todd Kellison

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More Surprises in the Global Greenhouse: Human Health Impacts from Recent Toxic Marine Aerosol Formations, Due to Centennial Alterations of World-Wide Coastal Food Webs, John J. Walsh, Jason M. Lenes, Robert H. Weisberg, Lianyuan Zheng, Chuanmin Hu, Kent A. Fanning Ph.D., R. Snyder, and J. Smith

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Variability of Tropical Cyclone Rapid Intensification in the North Atlantic and Its Relationship with Climate Variations, Chunzai Wang, Xidong Wang, Robert H. Weisberg, and Michael L. Black

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Dataset for: Sun glint requirement for the remote detection of surface oil films, Mengqiu Wang

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Oil extraction Visible Infrared Imaging Radiometer Suite (VIIRS) Imagery, Western Gulf of Mexico 2005-2013, Mengqiu Wang

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Predicting Sargassum Blooms in the Caribbean Sea from MODIS Observations, Mengqiu Wang and Chuanmin Hu

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Photophysiological Tolerance of Algal Symbionts of Archaias Angulatus to Temperature Extremes, Heidi M. K. Waters and Pamela Hallock

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On the Loop Current Penetration into the Gulf of Mexico, Robert H. Weisberg and Yonggang Liu

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On the Movement of Deepwater Horizon Oil to Northern Gulf Beaches, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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Calculating Surface Ocean pCO2 from Biogeochemical Argo Floats Equipped with pH: An Uncertainty Analysis, N. L. Williams, L. W. Juranek, R. A. Feely, K. S. Johnson, J. L. Sarmiento, L. D. Talley, A. G. Dickson, A. R. Gray, R. Wanninkhof, J. L. Russell, S. C. Riser, and Y. Takeshita