Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
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  3. Attach your CV and send the email to: scholarcommons@usf.edu

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Submissions from 2019

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Vitamin D Status and Risk of Incident Tuberculosis Disease: A Nested Case-Control study, Systematic Review, and Individual-Participant Data Meta-Analysis, Omowunmi Aibana, Chuan-Chin Huang, Said Aboud, Alberto Arnedo-Pena, Mercedes C. Becerra, Juan B. Bellido-Blasco, Ramesh Bhosale, Roger Calderon, Silvia Chiang, and Jerome Galea

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Geography, Environmental Resources and African Development, Fenda A. Akiwumi and William C. Barnett

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Applicability of Combined GPR and Gradiometer to Detect Buried Shallow Targets for Near-Surface Investigations, Iftekhar Alam, William Piwonka, James Atkins, and Joseph E. Panzik

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Modeling an Intrusion Detection System Based on Adaptive Immunology, Vishwa Alaparthy and Salvatore D. Morgera

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New Exact Solutions of Nonlinear (3 + 1)-Dimensional Boiti-Leon-Manna-Pempinelli Equation, Mohamed R. Ali and Wen-Xiu Ma

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Solution of Nonlinear Volterra Integral Equations with Weakly Singular Kernel by Using the HOBW Method, Mohamed R. Ali, Mohamed M. Mousa, and Wen-Xiu Ma

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A New Exact Algorithm to Optimize a Linear Function over the Set of Efficient Solutions for Biobjective Mixed Integer Linear Programs, Alvaro Sierra Altamiranda and Hadi Charkhgard

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Complexity of Work and Incident Cognitive Impairment in Puerto Rican Older Adults, Ross Andel, Ana Luisa Dávila-Roman, Catherine Grotz, Brent J. Small, Kyriakos S. Markides, and Michael Crowe

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Improved Learning from Data Competitions through Strategic Design of Training and Test Data Sets, Christine M. Anderson-Cook, Lu Lu, Kary L. Myers, Kevin R. Quinlan, and Norma Pawley

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Rejoinder, Christine M. Anderson-Cook, Lu Lu, and Peter Parker

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Effective Interdisciplinary Collaboration Between Statisticians and Other Subject Matter Experts, Christine M. Anderson-Cook, Lu Lu, and Peter A. Parker

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How to Host An Effective Data Competition: Statistical Advice for Competition Design and Analysis, Christine M. Anderson-Cook, Kary L. Myers, Lu Lu, Michael L. Fugate, Kevin R. Quinlan, and Norma Pawley

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Knockdown of Arylalkylamine N-acetyltransferase-like 2 in Drosophila Melanogaster, Ryan L. Anderson, Dylan J. Wallis, Alexander Aguirre, Dean Holliday, and David J. Merkler

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The Evolving Role of Consumers, James E. Andrews, J. David Johnson, and Christina Eldredge

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Experimental Results with the Set-Theoretic Model Reference Adaptive Control Architecture on an Aerospace Testbed, Ehsan Arabi and Tansel Yucelen

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Human-in-the-Loop Systems with Inner and Outer Feedback Control Loops: Adaptation, Stability Conditions, and Performance Constraints, Ehsan Arabi, Tansel Yucelen, Rifat Sipahi, and Yildiray Yildiz

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Delaying Latency to Hyperbaric Oxygen-induced CNS Oxygen Toxicity Seizures by Combinations of Exogenous Ketone Supplements, Csilla Ari, Andrew P. Koutnik, Janine DeBlasi, Carol Landon, Christopher Q. Rogers, John Vallas, Sahil Bharwani, Michelle Puchowicz, Ilya Bederman, David M. Diamond, Mark S. Kindy, Jay B. Dean, and Dominic P. D′Agostino

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Geochemical and Faunal Characterization in the Sediments off the Cuban North and Northwest Coast, Maickel Armenteros, Patrick Schwing, Rebekka Larson, Adrian Martínez-Suárez, Raúl Fernández-Garcés, David Hollander, and Gregg Brooks

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The Criminalization of Homelessness, Amanda Aykanian and Sondra J. Fogel

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Insights on the Process of Two-stage Coronae Formation at Olivine-plagioclase Contact in Mafic Dyke from Palghat Cauvery Shear Zone, southern India, Meenakshi Banerjee, Upama Dutta, R. Anand, and Zachary D. Atlas

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Validation of VIIRS and MODIS Reflectance Data in Coastal and Oceanic Waters: An Assessment of Methods, Brian B. Barnes, Jennifer P. Cannizzaro, David C. English, and Chuanmin Hu

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Forest Filter Effect for Polybrominated Diphenyl Ethers in a Tropical Watershed, Kayson S.C. Barrett, Foday M. Jaward, and Amy L. Stuart

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Palaeobiogeography and Evolutionary Patterns of the Larger Foraminifer Borelis de Montfort (Borelidae), Davide Bassi, Juan C. Braga, Giovanni Di Domenico, Johannes Pignatti, Sigal Abramovich, Pamela Hallock, Janine Konen, Zoltan Kovacs, Martin R. Langer, Giulio Pavia, and Yasufumi Iryu

A Response to Scientific and Societal Needs for Marine Biological Observations, Nicholas J. Bax, Patricia Miloslavich, Frank Muller-Karger, Valerie Allain, Ward Appeltans, Sonia Dawn Batten, Lisandro Benedetti-Cecchi, Pier Luigi Buttigie, Sanae Chiba, Daniel Paul Costa, J. Emmett Duffy, Daniel C. Dunn, Craig Richard Johnson, Raphael M. Kudela, David Obura, Lisa-Maria Rebelo, Yunne-Jai Shin, Samantha Elisabeth Simmons, and Peter Lloyd Tyack

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Transmissibility and Potential for Disease Progression of Drug Resistant Mycobacterium Tuberculosis: Prospective Cohort Study, Mercedes C. Becerra, Chuan-Chin Huang, Leonid Lecca, Jaime Bayona, Carmen Contreras, Roger Calderon, Rosa Yataco, Jerome Galea, Zibiao Zhang, Sidney Atwood, Ted Cohen, Carole D. Mitnick, Paul Farmer, and Megan Murray

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Temporal and Spatial Scales of Sediment Transport Pathways for Sandy Barrier Tidal Inlets, Tanya M. Beck and Ping Wang

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Morphodynamics of Barrier-inlet Systems in the Context of Regional Sediment Management, with Case Studies from West-central Florida, USA, Tanya Beck and Ping Wang

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Riverine Calcium End-Members Improve Coastal Saturation State Calculations and Reveal Regionally Variable Calcification Potential, Sean Thomas Beckwith, Robert H. Byrne, and Pamela Hallock

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The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science Motive and Mission Overview, Michael J. Behrenfeld, Richard H. Moore, Chris A. Hostetler, Jason Graff, Peter Gaube, Lynn M. Russell, Gao Chen, Scott C. Doney, Stephen Giovannoni, Hongyu Liu, Christopher Proctor, Luis M. Bolaños, Nicholas Baetge, Cleo Davie-Martin, Toby K. Westberry, Timothy S. Bates, Thomas G. Bell, Kay D. Bidle, Emmanuel S. Boss, Sarah D. Brooks, Brian Cairns, Craig Carlson, Kimberly Halsey, Elizabeth L. Harvey, Chuanmin Hu, Lee Karp-Boss, Mary Kleb, Susanne Menden-Deuer, Françoise Morison, Patricia K. Quinn, Amy Jo Scarino, Bruce Anderson, Jacek Chowdhary, Ewan Crosbie, Richard Ferrare, Johnathan W. Hair, Yongxiang Hu, Scott Janz, Jens Redemann, Eric Saltzman, Michael Shook, David A. Siegel, Armin Wisthaler, Melissa Yang Martin, and Luke Ziemba

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Zeros of Optimal Polynomial Approximants: Jacobi Matrices and Jentzsch-type Theorems, Catherine Bénéteau, Dmitry Khavinson, Constanze Liaw, Daniel Seco, and Brian Simanek

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Predicting the Impact of Future Oil-spill Closures on Fishery-dependent Communities—a Spatially Explicit Approach, Igal Berenshtein, Shay O’Farrell, Natalie Perlin, James N. Sanchirico, Steven A. Murawski, Larry Perruso, and Claire B. Paris

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Kate Smith and Our Minstrel Past, Andrew S. Berish

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Metabolic Adaptations of the Pelagic Octopod Japetella diaphana to Oxygen Minimum Zones, Matthew A. Birk, K.A.S. Mislan, Karen F. Wishner, and Brad A. Seibel

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Evaluation of Evapotranspiration Variations as a Function of Relief and Terrain Exposure through Multivariate Statistical Analysis, R. W. Bosquilia, C. M.U Neale, S. N. Duarte, S. J. Longhi, S. D. Ferraz, Frank E. Muller-Karger, and M. J. McCarthy

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Evaluation of Evapotranspiration Variations According to Soil Type Using Multivariate Statistical Analysis, R. W. Bosquilia, C. M. U Neale, S. N. Duarte, S. J. Longhi, S. FD Ferraz, and Frank E. Muller-Karger

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Life in Stalin's Soviet Union, Kees Boterbloem

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Vaping Characteristics and Expectancies Are Associated with Smoking Cessation Propensity Among Dual Users of Combustible and Electronic Cigarettes, Karen O. Brandon, Vani N. Simmons, Lauren R. Meltzer, David J. Drobes, Úrsula Martínez, Steven K. Sutton, Amanda M. Palmer, Christopher R. Bullen, Paul T. Harrell, and Thomas H. Brandon

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The January 2014 Northern Cuba Earthquake Sequence: Unusual Location and Unexpected Source Mechanism Variability, Jochen Braunmiller, Glenn Thompson, and Stephen R. McNutt

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Calling: Earth #002 - Jen Bright, Palaeobiologist, Jen Bright

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The Multifactorial Nature of Beak and Skull Shape Evolution in Parrots and Cockatoos (Psittaciformes), Jen A. Bright, Jesús Marugán-Lobón, Emily J. Rayfield, and Samuel N. Cobb

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Gulf of Mexico (GoM) Bottom Sediments and Depositional Processes: A Baseline for Future Oil Spills, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Arne R. Diercks, Maickel Armenteros, Misael Diaz-Asencio, Joan-Albert Sanchez-Cabeza, Ana C. Ruiz-Fernandez, Juan Carlos Herguera, Libia H. Pérez-Bernal, and David Hollander

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The Effect of Incentives on HIV Research must be Studied, Brandon Brown and Jerome Galea

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Factors Associated With Payments to Research Participants: A Review of Sociobehavioral Studies at a Large Southern California Research University, Brandon Brown, Logan Marg, Zhiwei Zhang, Dario Kuzmanović, Karine Dubé, and Jerome Galea

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Ways of Coping and HIV Disclosure Among People Living with HIV: Mediation of Decision Self-efficacy and Moderation by Sex, Monique J. Brown, Julianne M. Serovich, Tanja C. Laschober, Judy A. Kimberly, and Celia M. Lescano

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Effects of a Digital Self-care Intervention in Adults with COPD: A Pilot Study, Andrew Bugajski, Susan K. Frazier, Lakeshia Cousin, Kaitlyn Rechenberg, Jaelyn Brown, Alexander J. Lengerich, Debra K. Moser, and Terry A. Lennie

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Selecting a Near-optimal Design for Multiple Criteria with Improved Robustness to Different User Priorities, Sarah E. Burke, Lu Lu, Christine M. Anderson-Cook, and Douglas C. Montgomery

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DNA Barcoding Reveals Clear Delineation Between Spawning Sites for Neritic Versus Oceanic Fishes in the Gulf of Mexico, Makenzie Burrows, Jeremy Browning, Mya Breitbart, Steven Murawski, and Ernst Peebles

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Observing Changes in Ocean Carbonate Chemistry: Our Autonomous Future, Seth M. Bushinsky, Yuichiro Takeshita, and Nancy L. Williams

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Communication Theory of Resilience in Everyday Talk, Interactions, and Network Structures, Patrice M. Buzzanell

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An Action Research Collaboration to Promote Mental Wellbeing Among Men of Color, Kymberly Byrd, Inés Palmarin, Roxann Mcneish Taormina, Connie Walker-Egea, Yusuf Ali, Marcos Beleche, and Renée Boynton-Jarrett

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Remote Detection of Cyanobacteria Blooms in an Optically Shallow Subtropical Lagoonal Estuary Using MODIS Data, Jennifer P. Cannizzaro, Brian B. Barnes, Chuanmin Hu, Alina A. Corcoran, Katherine A. Hubbard, Eric Muhlbach, William C. Sharp, Larry E. Brand, and Christopher R. Kelble

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Time of Detection as a Metric for Prioritizing Between Climate Observation Quality, Frequency, and Duration, B. R. Carter, N. L. Williams, W. Evans, A. J. Fassbender, L. Barbero, C. Hauri, R. A. Feely, and A. J. Sutton

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PRN OPINION PAPER: Application of Precision Medicine across Pharmacy Specialty Areas, Kelly E. Caudle, Roseann S. Gammal, Jason H. Karnes, Janna Afanasjeva, Keri C. Anderson, Erin F. Barreto, Craig Beavers, Shubha Bhat, Kara L. Birrer, Elias B. Chahine, Christopher R. Ensor, Stephanie A. Flowers, Christine M. Formea, Jomy M. George, Rena A. Gosser, Mary F. Hebert, Lamis R. Karaoui, Jimmi Hatton Kolpek, James C. Lee, Jonathan G. Leung, Angela Q. Maldonado, Molly G. Minze, Rebecca A. Pulk, Chasity M. Shelton, Maria Sheridan, Michael A. Smith, Scott Soefje, Eglis Tellez-Corrales, Christine M. Walko, and Larisa H. Cavallari

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Rust Belt Renaissance? The Experience of Refugees from Burma in Buffalo, New York, Seth Cavello

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Observational Requirements for Long-Term Monitoring of the Global Mean Sea Level and Its Components Over the Altimetry Era, Anny Cazenave; Ben Hamlington; Martin Horwath; Valentina R. Barletta; Jérôme Benveniste; Don Chambers; Petra Döll; Anna E. Hogg; Jean François Legeais; Mark Merrifield; Benoit Meyssignac; Garry Mitchum; Steve Nerem; Roland Pail; Hindumathi Palanisamy; Frank Paul; Schuckmann, Karina von Schuckmann; and Philip Thompson

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Coordination-Driven Self-Assembled Metallacycles Incorporating Pyrene: Fluorescence Mutability, Tunability, and Aromatic Amine Sensing, Xingmao Chang, Zhixuan Zhou, Congdi Shang, Gang Wang, Zhaolong Wang, Yanyu Qi, Zhong-Yu Li, Heng Wang, Liping Cao, Xiaopeng Li, Yu Fang, and Peter J. Stang

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Unusual Beach Changes Induced by Hurricane Irma with a Negative Storm Surge and Poststorm Recovery, Jun Cheng and Ping Wang

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The HIV SEERs Project: A Qualitative Analysis of Program Facilitators’ Experience, Tiffany Chenneville, Kemesha Gabbidon, and Hunter Drake

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Exact Solutions to a Generalized Bogoyavlensky-Konopelchenko Equation via Maple Symbolic Computations, Shou-Ting Chen and Wen-Xiu Ma

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Environmental Controls of Surface Water pCO2 in Different Coastal Environments: Observations from Marine Buoys, Shuangling Chen and Chuanmin Hu

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A Machine Learning Approach to Estimate Surface Ocean PCO2 from Satellite Measurements, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Rik Wanninkhof, Wei-Jun Cai, Leticia Barbero, and Denis Pierrot

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Improving Ocean Color Data Coverage through Machine Learning, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Yuyuan Xie, Gong Lin, and Zhongfeng Qiu

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Vehicle Forward Collision Warning Algorithm Based on Road Friction, Tao Chen, Ka Liu, Zhenyu Wang, Gang Deng, and Bin Chen

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Exploring the Equity Performance of Bike-Sharing Systems with Disaggregated Data: A Story of Southern Tampa, Zhiwei Chen, Yujie Guo, Amy L. Stuart, Yu Zhang, and Xiaopeng Li

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Cognitive and Functional Status of Persons Newly Enrolled at Dementia-Specific Adult Day Centers and Burden of Their Caregivers, David A. Chiriboga, Nan S. Park, Karen Gilbert, Victor A. Molinari, and Mary Barnes

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Statistical Simulation of Ocean Current Patterns Using Autoregressive Logistic Regression Models: a Case Study in the Gulf of Mexico, Helios Chiri, Ana J. Abascal, Sonia Castanedo, José A. A. Antolínez, Yonggang Liu, Robert H. Weisberg, and Raul Medina

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Functional Inhibition of Acid Sphingomyelinase Disrupts Infection by Intracellular Bacterial Pathogens, Chelsea L. Cockburn, Ryan S. Green, Sheela R. Damle, Rebecca K. Martin, Naomi N. Ghahrai, Punsiri M. Colonne, Marissa S. Fullerton, Daniel H. Conrad, Charles E. Chalfant, Daniel E. Voth, Elizabeth A. Rucks, Stacey D. Gilk, and Jason A. Carlyon

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Resilience of a Commercial Fishing Fleet Following Emergency Closures in the Gulf of Mexico, Marcy L. Cockrell, Shay O’Farrell, James Sanchirico, Steven A. Murawski, Larry Perruso, and Andrew Strelcheck

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Calling: Earth #011 - Jennifer Collins, Meteorologist, Jennifer Collins

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The 2015 Hurricane Season in the North Atlantic: An Analysis of Environmental Conditions, Jennifer Collins and David R. Roache

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Florida Weather and Climate: More than just Sunshine, Jennifer Collins, Robert V. Rohli, and Charles H. Paxton

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Hurricane Risk, Jennifer Collins and Kevin Walsh

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Love is Exhaustion, Brian Connolly

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Revisiting Psychoanalytic History, Brian Connolly

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The Subterranean Life of Repression, Brian Connolly

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Modelling Tephra Thickness and Particle Size Distribution of the 1913 Eruption of Volcán de Colima, Mexico, Charles B. Connor, Laura J. Connor, C. Bonadonna, J. Luhr, I. P. Savov, and C. Navarro-Ochoa

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Comparison of DNA Methylation in Vibrio Vulnificus Cells Grown in Human Serum with Those Grown in Seawater, James W. Conrad and Valerie J. Harwood

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A Hierarchical Taxonomy of Psychopathology Can Transform Mental Health Research, Christopher C. Conway, Miriam K. Forbes, Kelsie T. Forbush, Eiko I. Fried, Michael N. Hallquist, Roman Kotov, Stephanie N. Mullins-Sweatt, Alexander J. Shackman, Andrew E. Skodol, Susan C. South, Matthew Sunderland, Monika A. Waszczuk, David H. Zald, Mohammad H. Afzali, Marina Bornovalova, Natacha Carragher, Anna R. Docherty, Katherine G. Jonas, Robert F. Krueger, Praveetha Patalay, Aaron L. Pincus, Jennifer L. Tackett, Ulrich Reininghaus, Irwin D. Waldman, Aidan G. Wright, Johannes Zimmermann, Bo Bach, R. Michael Bagby, Michael Chmielewski, David C. Cicero, Lee Anna Clark, Tim Dalgleish, Colin G. DeYoung, Christopher J. Hopwood, Masha Y. Ivanova, Robert D. Latzman, Christopher J. Patrick, Camilo J. Ruggero, Douglas B. Samuel, David Watson, and Nicholas R. Eaton

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Tracing and Constraining Anthropogenic Aerosol Iron Fluxes to the North Atlantic Ocean using Iron Isotopes, Tim Conway, Douglas S. Hamilton, Rachel U. Shelley, Ana M. Aguilar-Islas, William M. Landing, Natalie M. Mahowald, and Seth G. John

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The CARICOMP Network of Caribbean Marine Laboratories (1985–2007): History, Key Findings, and Lessons Learned, Jorge Cortes, Hazel A. Oxenford, Brigitta I. van Tussenbroek, Eric Jordan-Dahlgren, Aldo Croquer, Carolina Bastidas, and John C. Ogden

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Population Fragmentation Leads to Morpho-Functional Variation in British Red Squirrels (Sciurus vulgaris), Philip G. Cox, Philip J.R. Morris, and Andrew C. Kitchener

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Evaluation of Florida Stone Crab Life History and Management Scenarios using Spawning Potential Ratios, Claire E. Crowley, David Chagaris, Ryan L. Gandy, and Kendra L. Daly

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Fecundity Assessment of Stone Crabs in the Eastern Gulf of Mexico, Claire E. Crowley, Colin P. Shea, Ryan L. Gandy, and Kendra L. Daly

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Effects of Early Life NICU Stress on the Developing Gut Microbiome, Amy L. D’Agata, Jing Wu, Manushi K. V. Welandawe, Samia V. O. Dutra, Bradley Kane, and Maureen Groer

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Not Restricted to Selection Research: Accounting for Indirect Range Restriction in Organizational Research, Jeffrey A. Dahlke and Brenton M. Wiernik

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Understanding the Physical Health Status, Health Literacy, and Health-Related Interventions in School-Base Samples of Youth with Learning Disorders and Emotional Disturbance, Jacqueline Huscroft D'Angelo, Alexandra L. Trout, Kristen Duppong Hurley, and Stacy-Ann A. January

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Hyletic Phenomenology and Hyperobjects, Seth Daves

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Does Maternal Education Decrease Female Genital Cutting?, Elisabetta De Cao and Giulia La Mattina

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Single-amino Acid Variants Reveal Evolutionary Processes that Shape the Biogeography of a Global SAR11 Subclade, Tom O. Delmont, Evan Kiefl, Ozsel Kilinc, Ozcan C. Esen, Ismail Uysal, Michael S. Rappé, Steven Giovannoni, and A. Murat Eren

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High-Resolution DEM Generation from Spaceborne and Terrestrial Remote Sensing Data for Improved Volcano Hazard Assessment — A Case Study at Nevado del Ruiz, Colombia, Fanghui Deng, Mel Rodgers, Surui Xie, Timothy Dixon, Sylvain J. Charbonnier, Elisabeth Gallant, Christian Mauricio López Vélez, Milton Ordoñez, Rocco Malservisi, Nicholas K. Voss, and Jacob A. Richardson

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Queer Theory, J. Michael Denton

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Review of Queer People of Color in Higher Education, J. Michael Denton

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The OTUD5–UBR5 Complex Regulates FACT-mediated Transcription at Damaged Chromatin, Angelo de Vivo, University of South Florida, Jose Yegres, Jeonghyeon Kim, Sylvia Emly, and Younghoon Kee

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Enhanced Glacial Discharge from the Eastern Antarctic Peninsula since the 1700s Associated with a Positive Southern Annular Mode, W. A. Dickens, G. Kuhn, M. J. Leng, Alastair G. C. Graham, J. A. Dowdeswell, M. P. Meredith, C.-D. Hillenbrand, D. A. Hodgson, S. J. Roberts, H. Sloane, and J. A. Smith

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USFT Digital Scholarship Services Annual Report: FY 2018-2019, Digital Scholarship Services

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Whole Genome Sequencing Identifies Bacterial Factors Affecting Transmission of Multidrug-Resistant Tuberculosis in a High-Prevalence Setting, Avika Dixit, Luca Freschi, Roger Vargas, Roger Calderon, James Sacchettini, Francis Drobniewski, Jerome Galea, Carmen Contreras, Rosa Yataco, and Zibiao Zhang

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Aragonite Dissolution Kinetics and Calcite/aragonite Ratios in Sinking and Suspended Particles in the North Pacific, Sijia Dong, William M. Berelson, Nick E. Rollins, Adam V. Subhas, John D. Naviaux, Aaron J. Celestian, Xuewu Liu, Nitya Turaga, Nathaniel J. Kemnitz, Robert H. Byrne, and Jess F. Adkins

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Coral Reef Geomorphology of the Spratly Islands: A Simple Method Based on Time-Series of Landsat-8 Multi-Band Inundation Maps, Yanzhu Dong, Yongxue Liu, Chuanmin Hu, and Bihua Xu