Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

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Submissions from 2020

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Early Life History Growth in Fish Reflects Consumption-mortality Tradeoffs, Kelly Vasbinder and Cameron Ainsworth

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Monitoring the Fate of Injected CO2 using Geodetic Techniques, Donald W. Vasco, Timothy H. Dixon, Alessandro Ferretti, and Sergey V. Samsonov

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Spawning Origins and Ontogenetic Movements for Demersal Fishes: An Approach Using Eye-lens Stable Isotopes, Julie L. Vecchio and Ernst B. Peebles

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Morphological and Sedimentological Impacts of Hurricane Michael along the Northwest Florida Coast, Ping Wang, Jacob D. Adam, Jun Cheng, and Mathieu Vallée

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Metal–Organic Frameworks for Enzyme Immobilization: Beyond Host Matrix Materials, Xiaoliang Wang, Pui Ching Lan, and Shengqian Ma

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Beyond Confined Catalysis in Porous Materials, Xiaoliang Wang, Pui Ching Lan, Sai Wang, and Shengqian Ma

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Future Vision for Autonomous Ocean Observations, Christopher Whitt, Jay Pearlman, Brian Polagye, Frank Caimi, Frank Muller-Karger, Andrea Copping, Heather Spence, Shyam Madhusudhana, William Kirkwood, Ludovic Grosjean, Bilal Muhammad Fiaz, Satinder Singh, Sikandra Singh, Dana Manalang, Ananya Sen Gupta, Alain Maguer, Justin J. H. Buck, Andreas Marouchos, Malayath Aravindakshan Atmanand, Ramasamy Venkatesan, Vedachalam Narayanaswamy, Pierre Testor, Elizabeth Douglas, Sebastien de Halleux, and Siri Jodha Khalsa

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Ocean Deoxygenation and Copepods: Coping with Oxygen Minimum Zone Variability, Karen F. Wishner, Brad Seibel, and Dawn Outram

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Factors Affecting the 2019 Atlantic Hurricane Season and the Role of the Indian Ocean Dipole, Kimberly M. Wood, Philip J. Klotzbach, Jennifer M. Collins, Louis-Philippe Caron, Ryan E. Truchelut, and Carl J. Schreck

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Symmetry Breaking Soliton, Breather, and Lump Solutions of a Nonlocal Kadomtsev–Petviashvili System, Hong-Yu Wu, Jin-Xi Fei, Zheng-Yi Ma, Jun-Chao Chen, and Wen-Xiu Ma

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Biogenic Silica and Organic Carbon Records in Zhoushan Coastal Sea over the Past One Hundred Years and Their Environmental Indications, Hao Xu, Shangwei Jiang, Jialin Li, Ruiliang Pu, Jia Wang, Wanghai Jin, Longbin Sha, and Dongling Li

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Elizabeth Ann Seton, Cassandra L. Yacovazzi

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Katharine Drexel, Cassandra L. Yacovazzi

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Highly efficient electrocatalytic hydrogen evolution promoted by O–Mo–C interfaces of ultrafine β-Mo2C nanostructures, Hui Yang, Xing Chen, Guoxiang Hu, Wan-Ting Chen, Siobhan J. Bradley, Weijie Zhang, Gaurav Verma, Thomas Nann, De-en Jiang, Paul E. Kruger, Xiangke Wang, He Tian, Geoffrey I. N. Waterhouse, Shane G. Telfer, and Shengqian Ma

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Giant, Unconventional Anomalous Hall Effect in the Metallic Frustrated Magnet Candidate, KV3Sb5, Shuo-Ying Yang, Yaojia Wang, Brenden R. Ortiz, Defa Liu, Jacob Gayles, Elena Derunova, Rafael Gonzalez-Hernandez, Libor Šmejkal, Yulin Chen, Stuart S. P. Parkin, Stephen D. Wilson, Eric S. Toberer, Tyrel McQueen, and Mazhar N. Ali

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Genome Sequence of Vibrio natriegens Phage vB_VnaS-AQKL99, Noah Yonas, Paige Boleman, Y Nguyen, Makenzie Kerr, Kema Malki, Anthony M. Greco, and Mya Breitbart

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A Preliminary Exploration of the Cooling Effect of Tree Shade in Urban Landscapes, Qiuyan Yu, Wenjie Ji, Ruiliang Pu, Shawn Landry, Michael Acheampong, Jarlath O'Neil-Dunne, Zhibin Ren, and Shakhawat H. Tanim

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Lump Solutions of a Nonlinear PDE Combining with a New Fourth-Order Term, Liqin Zhang, Wen-Xiu Ma, and Yehui Huang

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Evaluation of Remote Sensing Reflectance Derived From the Sentinel-2 Multispectral Instrument Observations Using POLYMER Atmospheric Correction, Minwei Zhang and Chuanmin Hu

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Spontaneous Formation of Sub-4 nm Nanocrystalline Alloy Via Polymorphic Phase Transformation, Ying Zhong, Chunqing Wang, Jin Wang, Huiwen Ma, Sriram Krishnamoorthy, Vladislav Paley, Zijian Weng, and Sungho Jin

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Estimating Road Network Accessibility during a Hurricane Evacuation: A Case Study of Hurricane Irma in Florida, Yi-Jie Zhu, Yujie Hu, and Jennifer M. Collins

Submissions from 2019

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The Calling of Social Thought: Rediscovering the Work of Edward Shils, Christopher Adair-Toteff and Stephen Turner

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Vitamin D Status and Risk of Incident Tuberculosis Disease: A Nested Case-Control study, Systematic Review, and Individual-Participant Data Meta-Analysis, Omowunmi Aibana, Chuan-Chin Huang, Said Aboud, Alberto Arnedo-Pena, Mercedes C. Becerra, Juan B. Bellido-Blasco, Ramesh Bhosale, Roger Calderon, Silvia Chiang, and Jerome Galea

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Geography, Environmental Resources and African Development, Fenda A. Akiwumi and William C. Barnett

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Applicability of Combined GPR and Gradiometer to Detect Buried Shallow Targets for Near-Surface Investigations, Iftekhar Alam, William Piwonka, James Atkins, and Joseph E. Panzik

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New Exact Solutions of Nonlinear (3 + 1)-Dimensional Boiti-Leon-Manna-Pempinelli Equation, Mohamed R. Ali and Wen-Xiu Ma

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Solution of Nonlinear Volterra Integral Equations with Weakly Singular Kernel by Using the HOBW Method, Mohamed R. Ali, Mohamed M. Mousa, and Wen-Xiu Ma

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The Evolving Role of Consumers, James E. Andrews, J. David Johnson, and Christina Eldredge

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Delaying Latency to Hyperbaric Oxygen-induced CNS Oxygen Toxicity Seizures by Combinations of Exogenous Ketone Supplements, Csilla Ari, Andrew P. Koutnik, Janine DeBlasi, Carol Landon, Christopher Q. Rogers, John Vallas, Sahil Bharwani, Michelle Puchowicz, Ilya Bederman, David M. Diamond, Mark S. Kindy, Jay B. Dean, and Dominic P. D′Agostino

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Geochemical and Faunal Characterization in the Sediments off the Cuban North and Northwest Coast, Maickel Armenteros, Patrick Schwing, Rebekka Larson, Adrian Martínez-Suárez, Raúl Fernández-Garcés, David Hollander, and Gregg Brooks

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The Criminalization of Homelessness, Amanda Aykanian and Sondra J. Fogel

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Insights on the Process of Two-stage Coronae Formation at Olivine-plagioclase Contact in Mafic Dyke from Palghat Cauvery Shear Zone, southern India, Meenakshi Banerjee, Upama Dutta, R. Anand, and Zachary D. Atlas

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Validation of VIIRS and MODIS Reflectance Data in Coastal and Oceanic Waters: An Assessment of Methods, Brian B. Barnes, Jennifer P. Cannizzaro, David C. English, and Chuanmin Hu

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Forest Filter Effect for Polybrominated Diphenyl Ethers in a Tropical Watershed, Kayson S.C. Barrett, Foday M. Jaward, and Amy L. Stuart

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Palaeobiogeography and Evolutionary Patterns of the Larger Foraminifer Borelis de Montfort (Borelidae), Davide Bassi, Juan C. Braga, Giovanni Di Domenico, Johannes Pignatti, Sigal Abramovich, Pamela Hallock, Janine Konen, Zoltan Kovacs, Martin R. Langer, Giulio Pavia, and Yasufumi Iryu

A Response to Scientific and Societal Needs for Marine Biological Observations, Nicholas J. Bax, Patricia Miloslavich, Frank Muller-Karger, Valerie Allain, Ward Appeltans, Sonia Dawn Batten, Lisandro Benedetti-Cecchi, Pier Luigi Buttigie, Sanae Chiba, Daniel Paul Costa, J. Emmett Duffy, Daniel C. Dunn, Craig Richard Johnson, Raphael M. Kudela, David Obura, Lisa-Maria Rebelo, Yunne-Jai Shin, Samantha Elisabeth Simmons, and Peter Lloyd Tyack

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Transmissibility and Potential for Disease Progression of Drug Resistant Mycobacterium Tuberculosis: Prospective Cohort Study, Mercedes C. Becerra, Chuan-Chin Huang, Leonid Lecca, Jaime Bayona, Carmen Contreras, Roger Calderon, Rosa Yataco, Jerome Galea, Zibiao Zhang, Sidney Atwood, Ted Cohen, Carole D. Mitnick, Paul Farmer, and Megan Murray

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Morphodynamics of Barrier-inlet Systems in the Context of Regional Sediment Management, with Case Studies from West-central Florida, USA, Tanya Beck and Ping Wang

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Riverine Calcium End-Members Improve Coastal Saturation State Calculations and Reveal Regionally Variable Calcification Potential, Sean Thomas Beckwith, Robert H. Byrne, and Pamela Hallock

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The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science Motive and Mission Overview, Michael J. Behrenfeld, Richard H. Moore, Chris A. Hostetler, Jason Graff, Peter Gaube, Lynn M. Russell, Gao Chen, Scott C. Doney, Stephen Giovannoni, Hongyu Liu, Christopher Proctor, Luis M. Bolaños, Nicholas Baetge, Cleo Davie-Martin, Toby K. Westberry, Timothy S. Bates, Thomas G. Bell, Kay D. Bidle, Emmanuel S. Boss, Sarah D. Brooks, Brian Cairns, Craig Carlson, Kimberly Halsey, Elizabeth L. Harvey, Chuanmin Hu, Lee Karp-Boss, Mary Kleb, Susanne Menden-Deuer, Françoise Morison, Patricia K. Quinn, Amy Jo Scarino, Bruce Anderson, Jacek Chowdhary, Ewan Crosbie, Richard Ferrare, Johnathan W. Hair, Yongxiang Hu, Scott Janz, Jens Redemann, Eric Saltzman, Michael Shook, David A. Siegel, Armin Wisthaler, Melissa Yang Martin, and Luke Ziemba

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Predicting the Impact of Future Oil-spill Closures on Fishery-dependent Communities—a Spatially Explicit Approach, Igal Berenshtein, Shay O’Farrell, Natalie Perlin, James N. Sanchirico, Steven A. Murawski, Larry Perruso, and Claire B. Paris

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Kate Smith and Our Minstrel Past, Andrew S. Berish

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Metabolic Adaptations of the Pelagic Octopod Japetella diaphana to Oxygen Minimum Zones, Matthew A. Birk, K.A.S. Mislan, Karen F. Wishner, and Brad A. Seibel

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Evaluation of Evapotranspiration Variations as a Function of Relief and Terrain Exposure through Multivariate Statistical Analysis, R. W. Bosquilia, C. M.U Neale, S. N. Duarte, S. J. Longhi, S. D. Ferraz, Frank E. Muller-Karger, and M. J. McCarthy

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Evaluation of Evapotranspiration Variations According to Soil Type Using Multivariate Statistical Analysis, R. W. Bosquilia, C. M. U Neale, S. N. Duarte, S. J. Longhi, S. FD Ferraz, and Frank E. Muller-Karger

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Life in Stalin's Soviet Union, Kees Boterbloem

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The January 2014 Northern Cuba Earthquake Sequence: Unusual Location and Unexpected Source Mechanism Variability, Jochen Braunmiller, Glenn Thompson, and Stephen R. McNutt

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Calling: Earth #002 - Jen Bright, Palaeobiologist, Jen Bright

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The Multifactorial Nature of Beak and Skull Shape Evolution in Parrots and Cockatoos (Psittaciformes), Jen A. Bright, Jesús Marugán-Lobón, Emily J. Rayfield, and Samuel N. Cobb

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Gulf of Mexico (GoM) Bottom Sediments and Depositional Processes: A Baseline for Future Oil Spills, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Arne R. Diercks, Maickel Armenteros, Misael Diaz-Asencio, Joan-Albert Sanchez-Cabeza, Ana C. Ruiz-Fernandez, Juan Carlos Herguera, Libia H. Pérez-Bernal, and David Hollander

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The Effect of Incentives on HIV Research must be Studied, Brandon Brown and Jerome Galea

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Factors Associated With Payments to Research Participants: A Review of Sociobehavioral Studies at a Large Southern California Research University, Brandon Brown, Logan Marg, Zhiwei Zhang, Dario Kuzmanović, Karine Dubé, and Jerome Galea

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DNA Barcoding Reveals Clear Delineation Between Spawning Sites for Neritic Versus Oceanic Fishes in the Gulf of Mexico, Makenzie Burrows, Jeremy Browning, Mya Breitbart, Steven Murawski, and Ernst Peebles

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Observing Changes in Ocean Carbonate Chemistry: Our Autonomous Future, Seth M. Bushinsky, Yuichiro Takeshita, and Nancy L. Williams

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Remote Detection of Cyanobacteria Blooms in an Optically Shallow Subtropical Lagoonal Estuary Using MODIS Data, Jennifer P. Cannizzaro, Brian B. Barnes, Chuanmin Hu, Alina A. Corcoran, Katherine A. Hubbard, Eric Muhlbach, William C. Sharp, Larry E. Brand, and Christopher R. Kelble

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Time of Detection as a Metric for Prioritizing Between Climate Observation Quality, Frequency, and Duration, B. R. Carter, N. L. Williams, W. Evans, A. J. Fassbender, L. Barbero, C. Hauri, R. A. Feely, and A. J. Sutton

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Rust Belt Renaissance? The Experience of Refugees from Burma in Buffalo, New York, Seth Cavello

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Observational Requirements for Long-Term Monitoring of the Global Mean Sea Level and Its Components Over the Altimetry Era, Anny Cazenave; Ben Hamlington; Martin Horwath; Valentina R. Barletta; Jérôme Benveniste; Don Chambers; Petra Döll; Anna E. Hogg; Jean François Legeais; Mark Merrifield; Benoit Meyssignac; Garry Mitchum; Steve Nerem; Roland Pail; Hindumathi Palanisamy; Frank Paul; Schuckmann, Karina von Schuckmann; and Philip Thompson

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Unusual Beach Changes Induced by Hurricane Irma with a Negative Storm Surge and Poststorm Recovery, Jun Cheng and Ping Wang

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The HIV SEERs Project: A Qualitative Analysis of Program Facilitators’ Experience, Tiffany Chenneville, Kemesha Gabbidon, and Hunter Drake

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Exact Solutions to a Generalized Bogoyavlensky-Konopelchenko Equation via Maple Symbolic Computations, Shou-Ting Chen and Wen-Xiu Ma

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Environmental Controls of Surface Water pCO2 in Different Coastal Environments: Observations from Marine Buoys, Shuangling Chen and Chuanmin Hu

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A Machine Learning Approach to Estimate Surface Ocean PCO2 from Satellite Measurements, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Rik Wanninkhof, Wei-Jun Cai, Leticia Barbero, and Denis Pierrot

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Improving Ocean Color Data Coverage through Machine Learning, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Yuyuan Xie, Gong Lin, and Zhongfeng Qiu

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Vehicle Forward Collision Warning Algorithm Based on Road Friction, Tao Chen, Ka Liu, Zhenyu Wang, Gang Deng, and Bin Chen

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Exploring the Equity Performance of Bike-Sharing Systems with Disaggregated Data: A Story of Southern Tampa, Zhiwei Chen, Yujie Guo, Amy L. Stuart, Yu Zhang, and Xiaopeng Li

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Cognitive and Functional Status of Persons Newly Enrolled at Dementia-Specific Adult Day Centers and Burden of Their Caregivers, David A. Chiriboga, Nan S. Park, Karen Gilbert, Victor A. Molinari, and Mary Barnes

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Statistical Simulation of Ocean Current Patterns Using Autoregressive Logistic Regression Models: a Case Study in the Gulf of Mexico, Helios Chiri, Ana J. Abascal, Sonia Castanedo, José A. A. Antolínez, Yonggang Liu, Robert H. Weisberg, and Raul Medina

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Functional Inhibition of Acid Sphingomyelinase Disrupts Infection by Intracellular Bacterial Pathogens, Chelsea L. Cockburn, Ryan S. Green, Sheela R. Damle, Rebecca K. Martin, Naomi N. Ghahrai, Punsiri M. Colonne, Marissa S. Fullerton, Daniel H. Conrad, Charles E. Chalfant, Daniel E. Voth, Elizabeth A. Rucks, Stacey D. Gilk, and Jason A. Carlyon

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Resilience of a Commercial Fishing Fleet Following Emergency Closures in the Gulf of Mexico, Marcy L. Cockrell, Shay O’Farrell, James Sanchirico, Steven A. Murawski, Larry Perruso, and Andrew Strelcheck

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Calling: Earth #011 - Jennifer Collins, Meteorologist, Jennifer Collins

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The 2015 Hurricane Season in the North Atlantic: An Analysis of Environmental Conditions, Jennifer Collins and David R. Roache

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Florida Weather and Climate: More than just Sunshine, Jennifer Collins, Robert V. Rohli, and Charles H. Paxton

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Hurricane Risk, Jennifer Collins and Kevin Walsh

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Love is Exhaustion, Brian Connolly

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Revisiting Psychoanalytic History, Brian Connolly

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The Subterranean Life of Repression, Brian Connolly

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Modelling Tephra Thickness and Particle Size Distribution of the 1913 Eruption of Volcán de Colima, Mexico, Charles B. Connor, Laura J. Connor, C. Bonadonna, J. Luhr, I. P. Savov, and C. Navarro-Ochoa

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Comparison of DNA Methylation in Vibrio Vulnificus Cells Grown in Human Serum with Those Grown in Seawater, James W. Conrad and Valerie J. Harwood

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Tracing and Constraining Anthropogenic Aerosol Iron Fluxes to the North Atlantic Ocean using Iron Isotopes, Tim Conway, Douglas S. Hamilton, Rachel U. Shelley, Ana M. Aguilar-Islas, William M. Landing, Natalie M. Mahowald, and Seth G. John

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The CARICOMP Network of Caribbean Marine Laboratories (1985–2007): History, Key Findings, and Lessons Learned, Jorge Cortes, Hazel A. Oxenford, Brigitta I. van Tussenbroek, Eric Jordan-Dahlgren, Aldo Croquer, Carolina Bastidas, and John C. Ogden

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Population Fragmentation Leads to Morpho-Functional Variation in British Red Squirrels (Sciurus vulgaris), Philip G. Cox, Philip J.R. Morris, and Andrew C. Kitchener

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Evaluation of Florida Stone Crab Life History and Management Scenarios using Spawning Potential Ratios, Claire E. Crowley, David Chagaris, Ryan L. Gandy, and Kendra L. Daly

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Fecundity Assessment of Stone Crabs in the Eastern Gulf of Mexico, Claire E. Crowley, Colin P. Shea, Ryan L. Gandy, and Kendra L. Daly

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High-Resolution DEM Generation from Spaceborne and Terrestrial Remote Sensing Data for Improved Volcano Hazard Assessment — A Case Study at Nevado del Ruiz, Colombia, Fanghui Deng, Mel Rodgers, Surui Xie, Timothy Dixon, Sylvain J. Charbonnier, Elisabeth Gallant, Christian Mauricio López Vélez, Milton Ordoñez, Rocco Malservisi, Nicholas K. Voss, and Jacob A. Richardson

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Queer Theory, J. Michael Denton

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Review of Queer People of Color in Higher Education, J. Michael Denton

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The OTUD5–UBR5 Complex Regulates FACT-mediated Transcription at Damaged Chromatin, Angelo de Vivo, University of South Florida, Jose Yegres, Jeonghyeon Kim, Sylvia Emly, and Younghoon Kee

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Enhanced Glacial Discharge from the Eastern Antarctic Peninsula since the 1700s Associated with a Positive Southern Annular Mode, W. A. Dickens, G. Kuhn, M. J. Leng, Alastair G. C. Graham, J. A. Dowdeswell, M. P. Meredith, C.-D. Hillenbrand, D. A. Hodgson, S. J. Roberts, H. Sloane, and J. A. Smith

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USFT Digital Scholarship Services Annual Report: FY 2018-2019, Digital Scholarship Services

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Whole Genome Sequencing Identifies Bacterial Factors Affecting Transmission of Multidrug-Resistant Tuberculosis in a High-Prevalence Setting, Avika Dixit, Luca Freschi, Roger Vargas, Roger Calderon, James Sacchettini, Francis Drobniewski, Jerome Galea, Carmen Contreras, Rosa Yataco, and Zibiao Zhang

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Aragonite Dissolution Kinetics and Calcite/aragonite Ratios in Sinking and Suspended Particles in the North Pacific, Sijia Dong, William M. Berelson, Nick E. Rollins, Adam V. Subhas, John D. Naviaux, Aaron J. Celestian, Xuewu Liu, Nitya Turaga, Nathaniel J. Kemnitz, Robert H. Byrne, and Jess F. Adkins

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Coral Reef Geomorphology of the Spratly Islands: A Simple Method Based on Time-Series of Landsat-8 Multi-Band Inundation Maps, Yanzhu Dong, Yongxue Liu, Chuanmin Hu, and Bihua Xu

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Urban Trees, House Price, and Redevelopment Pressure in Tampa, Florida, Geoffrey H. Donovan, Shawn Landry, and Cody Winter

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Calling: Earth #014 - Christine Downs, Geophysicist, Christine Downs

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Calling: Earth #007 - Joni Downs Firat, Wildlife Ecologist, Joni A. Downs

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Allee Effects, John M. Drake, Luděk Berec, and Andrew M. Kramer

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Where and with Whom Students Live: Impacts on Peer Belonging and Institutional Acceptance, Amber D. Dumford, Amy K. Ribera, and Angie L. Miller