Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

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Submissions from 2019

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Single-amino Acid Variants Reveal Evolutionary Processes that Shape the Biogeography of a Global SAR11 Subclade, Tom O. Delmont, Evan Kiefl, Ozsel Kilinc, Ozcan C. Esen, Ismail Uysal, Michael S. Rappé, Steven Giovannoni, and A. Murat Eren

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High-Resolution DEM Generation from Spaceborne and Terrestrial Remote Sensing Data for Improved Volcano Hazard Assessment — A Case Study at Nevado del Ruiz, Colombia, Fanghui Deng, Mel Rodgers, Surui Xie, Timothy Dixon, Sylvain J. Charbonnier, Elisabeth Gallant, Christian Mauricio López Vélez, Milton Ordoñez, Rocco Malservisi, Nicholas K. Voss, and Jacob A. Richardson

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Queer Theory, J. Michael Denton

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Review of Queer People of Color in Higher Education, J. Michael Denton

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The OTUD5–UBR5 Complex Regulates FACT-mediated Transcription at Damaged Chromatin, Angelo de Vivo, University of South Florida, Jose Yegres, Jeonghyeon Kim, Sylvia Emly, and Younghoon Kee

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Enhanced Glacial Discharge from the Eastern Antarctic Peninsula since the 1700s Associated with a Positive Southern Annular Mode, W. A. Dickens, G. Kuhn, M. J. Leng, Alastair G. C. Graham, J. A. Dowdeswell, M. P. Meredith, C.-D. Hillenbrand, D. A. Hodgson, S. J. Roberts, H. Sloane, and J. A. Smith

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USFT Digital Scholarship Services Annual Report: FY 2018-2019, Digital Scholarship Services

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Whole Genome Sequencing Identifies Bacterial Factors Affecting Transmission of Multidrug-Resistant Tuberculosis in a High-Prevalence Setting, Avika Dixit, Luca Freschi, Roger Vargas, Roger Calderon, James Sacchettini, Francis Drobniewski, Jerome Galea, Carmen Contreras, Rosa Yataco, and Zibiao Zhang

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Aragonite Dissolution Kinetics and Calcite/aragonite Ratios in Sinking and Suspended Particles in the North Pacific, Sijia Dong, William M. Berelson, Nick E. Rollins, Adam V. Subhas, John D. Naviaux, Aaron J. Celestian, Xuewu Liu, Nitya Turaga, Nathaniel J. Kemnitz, Robert H. Byrne, and Jess F. Adkins

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Coral Reef Geomorphology of the Spratly Islands: A Simple Method Based on Time-Series of Landsat-8 Multi-Band Inundation Maps, Yanzhu Dong, Yongxue Liu, Chuanmin Hu, and Bihua Xu

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Urban Trees, House Price, and Redevelopment Pressure in Tampa, Florida, Geoffrey H. Donovan, Shawn Landry, and Cody Winter

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Calling: Earth #014 - Christine Downs, Geophysicist, Christine Downs

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Calling: Earth #007 - Joni Downs Firat, Wildlife Ecologist, Joni A. Downs

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Allee Effects, John M. Drake, Luděk Berec, and Andrew M. Kramer

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Where and with Whom Students Live: Impacts on Peer Belonging and Institutional Acceptance, Amber D. Dumford, Amy K. Ribera, and Angie L. Miller

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Constraints on Global Mean Sea Level During Pliocene Warmth, Oana A. Dumitru, Jacqueline Austermann, Victor J. Polyak, Joan J. Fornós, Yemane Asmerom, Joaquín Ginés, Angel Ginés, and Bogdan P. Onac

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Rational Solutions to Two Sawada–Kotera-like Equations, Ya-Hong Du, Yin-Shan Yun, and Wen-Xiu Ma

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Cognitive Science and Social Theory, David Eck and Stephen Turner

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Continuous Cohomology of Topological Quandles, Mohamed Elhamdadi, Masahico Saito, and Emanuele Zappala

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Keeping an Eye on Antarctic Ice Sheet Stability, Carlota Escutia, Robert M. DeConto, Robert Dunbar, Laura De Santis, Amelia E. Shevenell, and Timothy Naish

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Zonal Jets in the Laboratory: Experiments with Electromagnetically Forced Flows, Stefania Espa, Gabriella Di Nitto, Boris Galperin, and Jesse Hoemann

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Population Dynamics of Pinfish in the Eastern Gulf of Mexico (1998-2016), Meaghan E. Faletti, Dinorah H. Chacin, Jonathan A. Peake, Timothy C. MacDonald, and Christopher D. Stallings

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Construction and Interconversion of Anion-coordination-based (‘aniono’) Grids and Double Helicates Modulated by Counter-cations, Xiaoxia Fan, Dan Zhang, Shiyu Jiang, Heng Wang, Lin-Ting Lin, Bo Zheng, Wen-Hua Xu, Yanxia Zhao, Benjamin P. Hay, Yi-Tsu Chan, Xiao-Juan Yang, Xiaopeng Li, and Biao Wu

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Future Climate and Land Use Change Impacts on River Flows in the Tapajós Basin in the Brazilian Amazon, Fabio Farinosi, Mauricio E. Arias, Eunjee Lee, Marcos Longo, Fabio F. Pereira, Angela Livino, Paul R. Moorcroft, and John Briscoe

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The Origin of Blue Coloration in a Fulgurite from Marquette, Michigan, Tian Feng, Carolyn Lang, and Matthew A. Pasek

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Carbon Cycling in the North American Coastal Ocean: A Synthesis, Katja Fennel, Simone Alin, Leticia Barbero, Wiley Evans, Timothée Bourgeois, Sarah Cooley, Frank E. Muller-Karger, and Lisa Robbins

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Shifting Ground: Landscape-Scale Modeling of Biogeochemical Processes under Climate Change in the Florida Everglades, Hilary Flower, Mark Rains, H. C. Fitz, William Orem, Susan Newman, Todd Z. Osborne, K. R. Reddy, and Jayantha Obeysekera

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100 Years and Counting, Sondra J. Fogel

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Investigating CO2 Sorption in SIFSIX-3-M (M = Fe, Co, Ni, Cu, Zn) through Computational Studies, Katherine A. Forrest, Tony Pham, Sameh K. Elsaidi, Mona H. Mohamed, Praveen K. Thallapally, Michael J. Zaworotko, and Brian Space

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Characterization of Porphyromonas gingivalis Sialidase and Disruption of its Role in Host–pathogen Interactions, Andrew M. Frey, Marianne J. Satur, Chatchawal Phansopa, Kiyonobu Honma, Paulina A. Urbanowicz, Daniel I. R. Spencer, Jonathan Pratten, David Bradshaw, Ashu Sharma, and Graham Stafford

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The Examination of Determinants And Barriers To End-Of-Life Decision Making and Planning, Brittany E. Gaines and Debra J. Dobbs

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Beyond Screening: A Call for the Routine Integration of Mental Health Care with Tuberculosis Treatment, Jerome Galea, I. Monedero-Recuero, and A. C. Sweetland

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Life-Threatening Allergies: Using a Patient-Engaged Approach, Joel Louis Gallagher, Robert David Rivera, Kirk Van Shepard, Tanvir Roushan, Golam Ahsan, Sheikh Iqbal Ahamed, Asriani Chiu, Mary Jurken, Pippa Margaret Simpson, Melodee Nugent, Karina Shah Gobin, Cheng K Fred Wen, and Christina E. Eldredge

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Calling: Earth #001 - Lis Gallant, Volcanologist, Elisabeth Gallant

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The world of jets, Boris Galperin and Peter L. Read

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Zonal Jets: Phenomenology, Genesis, and Physics, Boris Galperin and Peter L. Read

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Turbulence, Diffusion and Mixing Barriers in Flows with Zonal Jets, Boris Galperin, Semion Sukoriansky, Stefania Espa, Guglielmo Lacorata, Nadejda Dikovskaya, and Jesse Hoemann

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Barotropic and Zonostrophic Turbulence, Boris Galperin, Semion Sukoriansky, Roland M. Young, Rei Chemke, Yohai Kaspi, Peter L. Read, and Nadejda Dikovskaya

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Social Interaction With an Alcohol-Intoxicated or Cocaine-Injected Peer Selectively Alters Social Behaviors and Drinking in Adolescent Male and Female Rats, Danielle N. Gamble, Chloe C. Josefson, Mary K. Hennessey, Ashley M. Davis, Renee C. Waters, Brooke N. Jones, Destiny M. Belton, Nzia I. Hall, Taylor J. Costen, Cheryl L. Kirstein, and Antoniette M. Maldonado-Devincci

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A Ctenophore (comb jelly) Employs Vortex Rebound Dynamics and Outperforms other Gelatinous Swimmers, Brad J. Gemmell, Sean P. Colin, John H. Costello, and Kelly R. Sutherland

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Magnetically Tunable Organic Semiconductors with Superparamagnetic Nanoparticles, Rugang Geng, Hoang Mai Luong, Minh Thien Pham, Raja Das, Kristen Stojak Repa, Joshua Robles-Garcia, Tuan Anh Duong, Huy Thanh Pham, Thi Huong Au, Ngoc Diep Lai, George Keefe Larsen, Manh-Huong Phan, and Tho Duc Nguyen

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Exploration of Crime Scene Characteristics in Cyber-Related Homicides, F. Jeane Gerard, Norair Khachatryan, and Bethany Browning

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Calling: Earth #019 - Aurélie Germa, Volcanologist, Aurélie Germa

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Temporal Relationship between the Lassen Volcanic Center and Mafic Regional Volcanism, Aurélie Germa, Chris Perry, Xavier Quidelleur, Andrew Calvert, Michael Clynne, Charles Connor, Laura Connor, Rocco Malservisi, and Sylvain J. Charbonnier

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ENSO-induced Co-variability of Salinity, Plankton Biomass and Coastal Currents in the Northern Gulf of Mexico, Fabian A. Gomez, Sang-Ki Lee, Frank J. Hernandez, Luciano M. Chiaverano, Frank E. Muller-Karger, Yanyun Liu, and John T. Lamkin

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Molecular Approaches for an Operational Marine Biodiversity Observation Network, Kelly D. Goodwin, Frank E. Muller-Karger, Anni Djurhuus, Lisa Zeigler Allen, Andrew E. Allen, John P. McCrow, and Gabrielle Canonico Hyde

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Bubble Farming: Scalable Microcosms for Diatom Biofuel and the Next Green Revolution, Richard Gordon, Clifford R. Merz, Shawn Gurke, and Benoît Schoefs

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Temporal Persistence of Red Grouper Holes and Analysis of Associated Fish Assemblages from Towed Camera Data in the Steamboat Lumps Marine Protected Area, Sarah E. Grasty, Carrie C. Wall, John Willis Gray, Jennifer Brizzolara, and Steven Murawski

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Effects of Karenia brevis Harmful Algal Blooms on Fish Community Structure on the West Florida Shelf, A. M. Gray DiLeone and C. H. Ainsworth

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Last Tango in Cyberspace by Steven Kotler, Vicki Gregory

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Elevator Pitch by Linwood Barclay, Vicki L. Gregory

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The Girl with No Face by M.H Boroson, Vicki L. Gregory

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Vessel by Lisa A. Nichols, Vicki L. Gregory

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Representing Species Distributions in Spatially-explicit Ecosystem Models from Presence-only Data, Arnaud Grüss, Michael D. Drexler, Emily Chancellor, Cameron H. Ainsworth, Jeffrey S. Gleason, John M. Tirpak, Matthew S. Love, and Elizabeth A. Babcock

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Improved Methodology for Sensitive and Rapid Quantitative Proteomic Analysis of Adult-Derived Mouse Microglia: Application to a Novel In Vitro Mouse Microglial Cell Model, Jennifer Guergues, Ping Zhang, Bin Liu, and Stanley M. Stevens Jr.

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Impacts of Coastal Development Strategies on Long-Term Coastline Changes: A Comparison Between Tampa Bay, USA and Xiangshan Harbor, China, Qiandong Guo, Ruiliang Pu, Kimberly Tapley, Jun Cheng, Jialin Li, and Tong Jiao

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An Assessment of Population Exposure to NOx using GPS Data: A Case Study for Tampa, FL, Sashikanth Gurram, Vijayaraghavan Sivaraman, Amy L. Stuart, and Jonathan Apple

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Agent-Based Modeling to Estimate Exposures to Urban Air Pollution from Transportation: Exposure Disparities and Impacts of High-Resolution Data, Sashikanth Gurram, Amy L. Stuart, and Abdul R. Pinjari

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Open Data Visualizations and Analytics as Tools for Policy-making, Loni Hagen, Thomas E. Keller, Xiaoyi Yerden, and Luis Felipe Luna-Reyes

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Direct and Indirect Effects of Pine Silviculture on the Larval Occupancy and Breeding of Declining Amphibian Species, Christopher J E Haggerty, Thomas L. Crisman, and Jason R. Rohr

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Recent Outer-Shelf Foraminiferal Assemblages on the Carnarvon Ramp and Northwestern Shelf of Western Australia, Christian Haller, Pamela Hallock, Albert C. Hine, and Christopher G. Smith

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Distribution of Modern Salt-Marsh Foraminifera from the Eastern Mississippi Sound, U.S.A., Christian Haller, Christopher G. Smith, Pamela Hallock, Albert C. Hine, Lisa E. Osterman, and Terrence McCloskey

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Can Nutrition or Inflammation Moderate the Age-Cognition Association Among Older Adults?, Elizabeth P. Handing, Brent J. Small, Ross Andel, Cathy L. McEvoy, and Nagi Kumar

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Public Concern about Terrorism: Fear, Worry, and Support for Anti-Muslim Policies, Murat Haner, Melissa M. Sloan, Francis T. Cullen, Teresa C. Kulig, and Cheryl Lero Jonson

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Benchmarking the “Question, Persuade, Refer” Program Against Evaluations of Established Suicide Prevention Gatekeeper Trainings, Renee Brown Hangartner, Christine M. Totura, Christa D. Labouliere, Kim Gryglewicz, and Marc S. Karver

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Environmental Gradients Shape the Combined Effects of Multiple Parasites on Oyster Hosts in the Northern Gulf of Mexico, Torrance C. Hanley, J. Wilson White, Christopher D. Stallings, and David L. Kimbro

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Molecular Sieving and Direct Visualization of CO2 in Binding Pockets of an Ultramicroporous Lanthanide Metal–Organic Framework Platform, Lin Han, Tony Pham, Mingjing Zhuo, Katherine A. Forrest, Shanelle Suepaul, Brian Space, Michael J. Zaworotko, Wei Shi, Yao Chen, Peng Cheng, and Zhenjie Zhang

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Metabolomic Markers in Tongue-Coating Samples from Damp Phlegm Pattern Patients of Coronary Heart Disease and Chronic Renal Failure, Yiming Hao, Xue Yuan, Jin Yan, Minh Pham, Dekai Rohlsen, Peng Qian, Feng Cheng, and Yiqin Wang

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Florida Coastal Mapping Program—Overview and 2018 Workshop Report, Cheryl J. Hapke, Philip A. Kramer, Elizabeth H. Fetherston-Resch, Rene D. Baumstark, Ryan Druyor, Xan Fredericks, and Ekaterina Fitos

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A Federal-state Partnership for Mapping Florida's Coast and Sea Floor, C. J. Hapke, R. Druyor, R. Baumstark, P. Kramer, E. Fitos, X. Fredericks, and E. Fetherston-Resch

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Changes in Redox Conditions of Surface Sediments Following the Deepwater Horizon and Ixtoc 1 Events, David W. Hastings, Thea Bartlett, Gregg Brooks, Rebekka A. Larson, Kelly A. Quinn, Daniel Razionale, Patrick Schwing, Libia Hascibe Pérez Bernal, Ana Carolina Ruiz-Fernández, Joan-Albert Sánchez-Cabeza, and David Hollander

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Calling: Earth #010 - Mitch Hastings, Geophysicist, Mitchell Hastings

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Gravity Anomalies Reveal Volcano-Tectonic Interaction in an Active Distributed Volcanic Field, Blackfoot Reservoir Volcanic Field (ID), Mitchell S. Hastings, Rocco Malservisi, Bradford Mack, Tonian Robinson, Laura Connor, Mel Rodgers, and Peter C. La Femina

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Food Is Medicine: Providing Medically Tailored Meals to Community Members with Disease-associated Nutritional Risk Supports Stable BMI and Decreased Hospitalization, Jule Anne Henstenburg, Claudia Parvanta, Laura Pontiggia, Sue Daugherty, and Nicole Laverty

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Calling: Earth #021 - Greg Herbert, Paleobiologist, Gregory S. Herbert

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Spatial Variability in Size Structure, Growth, and Recruitment of Spotted Seatrout Among Six Florida Estuaries, Elizabeth Herdter, Behzad Mahmoudi, Ernst Peebles, and Steven A. Murawski

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Construction of a Cross-layer Linked G-octamer via Conformational Control: a Stable G-quadruplex in H-bond Competitive Solvents, Ying He, Yanbin Zhang, Lukasz Wojtas, Novruz G. Akhmedov, David Thai, Heng Wang, Xiaopeng Li, Hao Guo, and Xiaodong Shi

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Development Practices and Ordinances Predict Inter-City Variation in Florida Urban Tree Canopy Coverage, Deborah R. Hilbert, Andrew K. Koeser, Lara A. Roman, Keir Hamilton, Shawn M. Landry, Richard J. Hauer, Haley Campanella, Drew McLean, Michael Andreu, and Hector Perez

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Structural basis of phosphatidylcholine recognition by the C2–domain of cytosolic phospholipase A,2α, Yoshinori Hirano, Yong-Guang Gao, Daniel J. Stephenson, Ngoc T. Vu, Lucy Malinina, Dhirendra K. Simanshu, Charles E. Chalfant, Dinshaw J. Patel, and Rhoderick E. Brown

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Biological Oceanography of the Gulf of Mexico, Gary Hitchcock, Sumit Chakraborty, and Kendra L. Daly

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Structural, Chemical, Electrical, and Thermal Properties of n-Type NbFeSb, Dean Hobbis, Raphael P. Hermann, Hsin Wang, David S. Parker, Tribhuwan Pandey, Joshua Martin, Katharine Page, and George S. Nolas

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Differential Patterns of Circadian Rhythmicity in Women with Malignant Versus Benign Gynecologic Tumors, Aasha I. Hoogland

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Differential Patterns of Circadian Rhythmicity in Women with Malignant Versus Benign Gynecologic Tumors, Aasha I. Hoogland, Hailey W. Bulls, Brian D. Gonzalez, Alexi A. Wright, Brittany Kennedy, Brent J. Small, Navdeep Chahal, Bianca L. Arboleda, and Heather S.L. Jim

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Website Defacement and Routine Activities: Considering the Importance of Hackers’ Valuations of Potential Targets, C. Jordan Howell, George W. Burruss, David Maimon, and Shradha Sahani

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Celebrating Community in the Basic Course, Aubrey Huber

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Wunderkammer: the Performance Showcase as Critical Performative Pedagogy, Aubrey Huber and Chris McRae

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Improving Satellite Global Chlorophyll a Data Products Through Algorithm Refinement and Data Recovery, Chuanmin Hu, Lian Feng, Zhongping Lee, Bryan A. Franz, Sean W. Bailey, Jeremy Werdell, and Christopher W. Proctor

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Purification and Characterization of Thymol Blue for Spectrophotometric PH Measurements in Rivers, Estuaries, and Oceans, Ellie Hudson-Heck and Robert H. Byrne

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Use of Interaction Energies in QM/MM Free Energy Simulations, Phillip S. Hudson, H. Lee Woodcock, and Stefan Boresch

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On the Remote Estimation of Ulva Prolifera Areal Coverage and Biomass, Lianbo Hu, Kan Zeng, Chuanmin Hu, and Ming-Xia He

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Synthesis of a Novel Resorcin[4]arene–glucose Conjugate and its Catalysis of the CuAAC Reaction for the Synthesis of 1,4-Disubstituted 1,2,3-Tiazoles in Water, Ali A. Husain and Kirpal S. Bisht

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Measuring and Visualizing Place-Based Space-Time Job Accessibility, Yujie Hu and Joni A. Downs

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A Doctored Voice: Resistance, Reading and Righting as Womanist Pedagogy, Ylce Irizarry

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Documenting the Undocumented: Latina/o Narratives and Social Justice in the Era of Operation Gatekeeper. Marta Caminero-Santangelo, Ylce Irizarry

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Postcards from the Edges of Haiti: The Latinx Ecocriticism of Mayra Montero’s In the Palm of Darkness, Ylce Irizarry

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Identifying Fatality Risk Factors for the Commercial Vehicle Driver Population, Mouyid Islam and Seckin Ozkul

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The Modulation of Actin Dynamics via Atypical Protein Kinase-C Activated Cofilin Regulates Metastasis of Colorectal Cancer Cells, S. M. Anisul Islam, Rekha Patel, Raja Reddy Bommareddy, Khandker Mohammad Khalid, and Mildred Acevedo-Duncan

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Foundations of Information Policy, Paul T. Jaeger and Natalie Greene Taylor

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Evaluation of Schedule Frequency and Density when Monitoring Progress with Curriculum-based Measurement., Stacy-Ann A. January; Ethan R. Van Norman; Theodore J. Christ,; Scott P. Ardoin; Tanya L. Eckert; and Mary Jane White

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Experimental Validation of a Distributed Control Approach Based on Multiplex Networks on Formations of Unmanned Aerial Vehicles, Jesse Jaramillo, Tyler Wieczorek, Dzung M. Tran, Venkata S. Dadi, Tansel Yucelen, and Sriam Chellappan