Green Archiving For USF Faculty: Getting Started

  1. Update your CV to include all work completed since arriving at USF.
  2. Write a short email giving us permission to post your research. We will seek copyright permission to post the digital item(s).
  3. Attach your CV and send the email to: scholarcommons@usf.edu

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If you would like to self-submit your scholarly works you can submit content here.

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Submissions from 2020

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Scientist of the week!, Sarah L. Sheffield, Lisette Melendez, Kristin Houdyshell, and Mathew Burgos

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Examining the Statistical Relationships between Volcanic Seismic, Infrasound, and Electrical Signals: A Case Study of Sakurajima Volcano, 2015, Cassandra M. Smith, Glenn Thompson, Steven Reader, Sonja A. Behnke, Stephen R. McNutt, Ron Thomas, and Harald Edens

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Photic Stress on Coral Reefs in the Maldives: The Amphistegina Bleaching Index, Stephanie Stainbank, Silvia Spezzaferri, Valentina Beccari, Pamela Hallock, Arthur Adams, Auriele Angeloz, Daniela Basso, Annalisa Caragnano, Nicolo Del Piero, and Patrick Dietsche

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Geoscience Videos and Animations: How to Make Them with Your Students, and How to Use Them in the Classroom, Robert J. Stern, Jeff Ryan, Ning Wang, Victor J. Ricchezza, and Siloa Willis

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Cop Killers and the Death Penalty: an Exploratory Mixed Methods Analysis, North Carolina (1977–2009), Bernadette Stewart, John K. Cochran, M. Dwayne Smith, Beth Bjerregaard, and Sondra Fogel

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Distorting Science, putting Water at Risk, S. Mažeika Patricio Sullivan, Mark Rains, Amanda D. Rodewald, William W. Buzbee, and Amy D. Rosemond

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Preparing for The Inevitable: Ecological and Indigenous Community Impacts of Oil Spill-Related Mortality in The United States’ Arctic Marine Ecosystem, Paul M. Suprenand, Carie Hoover, Cameron H. Ainsworth, Lindsey N. Dornberger, and Chris J. Johnson

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Boosting Computational Effectiveness in Big Spatial Flow Data Analysis with Intelligent Data Reduction, Ran Tao, Zhaoya Gong, Qiwei Ma, and Jean-Claude Thill

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BiFlowLISA: Measuring Spatial Association for Bivariate Flow Data, Ran Tao and Jean-Claude Thill

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Capturing, Preserving, and Digitizing Legacy Seismic Data from the Montserrat Volcano Observatory Analog Seismic Network, July 1995–December 2004, Glenn Thompson, John A. Power, Jochen Braunmiller, Andrew B. Lockhart, Lloyd Lynch, Wendy McCausland, Charlotte A. Rowe, Thomas Shea, Randall A. White, and Charles I. Breithaupt

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Population Genomics of Three Deep-sea Cephalopod Species Reveals Connectivity Between the Gulf of Mexico and Northwestern Atlantic Ocean, L. E. Timm, H. D. Bracken-Grissom, A. Sosnowski, M. Breitbart, M. Vecchione, and H. Judkins

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Quantifying Rates of “Rifting while Drifting” in the Southern Gulf of California: The role of the Southern Baja California Microplate and its Eastern Boundary Zone, Paul J. Umhoefer, C. Plattner, and Rocco Malservisi

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Early Life History Growth in Fish Reflects Consumption-mortality Tradeoffs, Kelly Vasbinder and Cameron Ainsworth

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Monitoring the Fate of Injected CO2 using Geodetic Techniques, Donald W. Vasco, Timothy H. Dixon, Alessandro Ferretti, and Sergey V. Samsonov

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Morphological and Sedimentological Impacts of Hurricane Michael along the Northwest Florida Coast, Ping Wang, Jacob D. Adam, Jun Cheng, and Mathieu Vallée

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Factors Affecting the 2019 Atlantic Hurricane Season and the Role of the Indian Ocean Dipole, Kimberly M. Wood, Philip J. Klotzbach, Jennifer M. Collins, Louis-Philippe Caron, Ryan E. Truchelut, and Carl J. Schreck

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Biogenic Silica and Organic Carbon Records in Zhoushan Coastal Sea over the Past One Hundred Years and Their Environmental Indications, Hao Xu, Shangwei Jiang, Jialin Li, Ruiliang Pu, Jia Wang, Wanghai Jin, Longbin Sha, and Dongling Li

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Elizabeth Ann Seton, Cassandra L. Yacovazzi

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Katharine Drexel, Cassandra L. Yacovazzi

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Genome Sequence of Vibrio natriegens Phage vB_VnaS-AQKL99, Noah Yonas, Paige Boleman, Y Nguyen, Makenzie Kerr, Kema Malki, Anthony M. Greco, and Mya Breitbart

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A Preliminary Exploration of the Cooling Effect of Tree Shade in Urban Landscapes, Qiuyan Yu, Wenjie Ji, Ruiliang Pu, Shawn Landry, Michael Acheampong, Jarlath O'Neil-Dunne, Zhibin Ren, and Shakhawat H. Tanim

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Evaluation of Remote Sensing Reflectance Derived From the Sentinel-2 Multispectral Instrument Observations Using POLYMER Atmospheric Correction, Minwei Zhang and Chuanmin Hu

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Estimating Road Network Accessibility during a Hurricane Evacuation: A Case Study of Hurricane Irma in Florida, Yi-Jie Zhu, Yujie Hu, and Jennifer M. Collins

Submissions from 2019

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The Calling of Social Thought: Rediscovering the Work of Edward Shils, Christopher Adair-Toteff and Stephen Turner

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Vitamin D Status and Risk of Incident Tuberculosis Disease: A Nested Case-Control study, Systematic Review, and Individual-Participant Data Meta-Analysis, Omowunmi Aibana, Chuan-Chin Huang, Said Aboud, Alberto Arnedo-Pena, Mercedes C. Becerra, Juan B. Bellido-Blasco, Ramesh Bhosale, Roger Calderon, Silvia Chiang, and Jerome Galea

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Geography, Environmental Resources and African Development, Fenda A. Akiwumi and William C. Barnett

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Applicability of Combined GPR and Gradiometer to Detect Buried Shallow Targets for Near-Surface Investigations, Iftekhar Alam, William Piwonka, James Atkins, and Joseph E. Panzik

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The Evolving Role of Consumers, James E. Andrews, J. David Johnson, and Christina Eldredge

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Mechanisms of Organic Matter Export in Estuaries with Contrasting Carbon Sources, A. R. Arellano, T. S. Bianchi, C. L. Osburn, E. J. D'Sa, N. D. Ward, D. Oviedo-Vargas, I. D. Joshi, D. S. Ko, M. R. Shields, G. Kurian, and J. Green

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Geochemical and Faunal Characterization in the Sediments off the Cuban North and Northwest Coast, Maickel Armenteros, Patrick Schwing, Rebekka Larson, Adrian Martínez-Suárez, Raúl Fernández-Garcés, David Hollander, and Gregg Brooks

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The Criminalization of Homelessness, Amanda Aykanian and Sondra J. Fogel

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Insights on the Process of Two-stage Coronae Formation at Olivine-plagioclase Contact in Mafic Dyke from Palghat Cauvery Shear Zone, southern India, Meenakshi Banerjee, Upama Dutta, R. Anand, and Zachary D. Atlas

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Validation of VIIRS and MODIS Reflectance Data in Coastal and Oceanic Waters: An Assessment of Methods, Brian B. Barnes, Jennifer P. Cannizzaro, David C. English, and Chuanmin Hu

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Forest Filter Effect for Polybrominated Diphenyl Ethers in a Tropical Watershed, Kayson S.C. Barrett, Foday M. Jaward, and Amy L. Stuart

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Palaeobiogeography and Evolutionary Patterns of the Larger Foraminifer Borelis de Montfort (Borelidae), Davide Bassi, Juan C. Braga, Giovanni Di Domenico, Johannes Pignatti, Sigal Abramovich, Pamela Hallock, Janine Konen, Zoltan Kovacs, Martin R. Langer, Giulio Pavia, and Yasufumi Iryu

A Response to Scientific and Societal Needs for Marine Biological Observations, Nicholas J. Bax, Patricia Miloslavich, Frank Muller-Karger, Valerie Allain, Ward Appeltans, Sonia Dawn Batten, Lisandro Benedetti-Cecchi, Pier Luigi Buttigie, Sanae Chiba, Daniel Paul Costa, J. Emmett Duffy, Daniel C. Dunn, Craig Richard Johnson, Raphael M. Kudela, David Obura, Lisa-Maria Rebelo, Yunne-Jai Shin, Samantha Elisabeth Simmons, and Peter Lloyd Tyack

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Morphodynamics of Barrier-inlet Systems in the Context of Regional Sediment Management, with Case Studies from West-central Florida, USA, Tanya Beck and Ping Wang

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Riverine Calcium End-Members Improve Coastal Saturation State Calculations and Reveal Regionally Variable Calcification Potential, Sean Thomas Beckwith, Robert H. Byrne, and Pamela Hallock

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The North Atlantic Aerosol and Marine Ecosystem Study (NAAMES): Science Motive and Mission Overview, Michael J. Behrenfeld, Richard H. Moore, Chris A. Hostetler, Jason Graff, Peter Gaube, Lynn M. Russell, Gao Chen, Scott C. Doney, Stephen Giovannoni, Hongyu Liu, Christopher Proctor, Luis M. Bolaños, Nicholas Baetge, Cleo Davie-Martin, Toby K. Westberry, Timothy S. Bates, Thomas G. Bell, Kay D. Bidle, Emmanuel S. Boss, Sarah D. Brooks, Brian Cairns, Craig Carlson, Kimberly Halsey, Elizabeth L. Harvey, Chuanmin Hu, Lee Karp-Boss, Mary Kleb, Susanne Menden-Deuer, Françoise Morison, Patricia K. Quinn, Amy Jo Scarino, Bruce Anderson, Jacek Chowdhary, Ewan Crosbie, Richard Ferrare, Johnathan W. Hair, Yongxiang Hu, Scott Janz, Jens Redemann, Eric Saltzman, Michael Shook, David A. Siegel, Armin Wisthaler, Melissa Yang Martin, and Luke Ziemba

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Kate Smith and Our Minstrel Past, Andrew S. Berish

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Evaluation of Evapotranspiration Variations as a Function of Relief and Terrain Exposure through Multivariate Statistical Analysis, R. W. Bosquilia, C. M.U Neale, S. N. Duarte, S. J. Longhi, S. D. Ferraz, Frank E. Muller-Karger, and M. J. McCarthy

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Evaluation of Evapotranspiration Variations According to Soil Type Using Multivariate Statistical Analysis, R. W. Bosquilia, C. M. U Neale, S. N. Duarte, S. J. Longhi, S. FD Ferraz, and Frank E. Muller-Karger

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Life in Stalin's Soviet Union, Kees Boterbloem

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The January 2014 Northern Cuba Earthquake Sequence: Unusual Location and Unexpected Source Mechanism Variability, Jochen Braunmiller, Glenn Thompson, and Stephen R. McNutt

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Calling: Earth #002 - Jen Bright, Palaeobiologist, Jen Bright

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The Multifactorial Nature of Beak and Skull Shape Evolution in Parrots and Cockatoos (Psittaciformes), Jen A. Bright, Jesús Marugán-Lobón, Emily J. Rayfield, and Samuel N. Cobb

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Gulf of Mexico (GoM) Bottom Sediments and Depositional Processes: A Baseline for Future Oil Spills, Gregg R. Brooks, Rebekka A. Larson, Patrick Schwing, Arne R. Diercks, Maickel Armenteros, Misael Diaz-Asencio, Joan-Albert Sanchez-Cabeza, Ana C. Ruiz-Fernandez, Juan Carlos Herguera, Libia H. Pérez-Bernal, and David Hollander

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The Effect of Incentives on HIV Research must be Studied, Brandon Brown and Jerome Galea

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Factors Associated With Payments to Research Participants: A Review of Sociobehavioral Studies at a Large Southern California Research University, Brandon Brown, Logan Marg, Zhiwei Zhang, Dario Kuzmanović, Karine Dubé, and Jerome Galea

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DNA Barcoding Reveals Clear Delineation Between Spawning Sites for Neritic Versus Oceanic Fishes in the Gulf of Mexico, Makenzie Burrows, Jeremy Browning, Mya Breitbart, Steven Murawski, and Ernst Peebles

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Observing Changes in Ocean Carbonate Chemistry: Our Autonomous Future, Seth M. Bushinsky, Yuichiro Takeshita, and Nancy L. Williams

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Remote Detection of Cyanobacteria Blooms in an Optically Shallow Subtropical Lagoonal Estuary Using MODIS Data, Jennifer P. Cannizzaro, Brian B. Barnes, Chuanmin Hu, Alina A. Corcoran, Katherine A. Hubbard, Eric Muhlbach, William C. Sharp, Larry E. Brand, and Christopher R. Kelble

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Time of Detection as a Metric for Prioritizing Between Climate Observation Quality, Frequency, and Duration, B. R. Carter, N. L. Williams, W. Evans, A. J. Fassbender, L. Barbero, C. Hauri, R. A. Feely, and A. J. Sutton

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Rust Belt Renaissance? The Experience of Refugees from Burma in Buffalo, New York, Seth Cavello

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Observational Requirements for Long-Term Monitoring of the Global Mean Sea Level and Its Components Over the Altimetry Era, Anny Cazenave; Ben Hamlington; Martin Horwath; Valentina R. Barletta; Jérôme Benveniste; Don Chambers; Petra Döll; Anna E. Hogg; Jean François Legeais; Mark Merrifield; Benoit Meyssignac; Garry Mitchum; Steve Nerem; Roland Pail; Hindumathi Palanisamy; Frank Paul; Schuckmann, Karina von Schuckmann; and Philip Thompson

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Unusual Beach Changes Induced by Hurricane Irma with a Negative Storm Surge and Poststorm Recovery, Jun Cheng and Ping Wang

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Environmental Controls of Surface Water pCO2 in Different Coastal Environments: Observations from Marine Buoys, Shuangling Chen and Chuanmin Hu

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A Machine Learning Approach to Estimate Surface Ocean PCO2 from Satellite Measurements, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Rik Wanninkhof, Wei-Jun Cai, Leticia Barbero, and Denis Pierrot

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Improving Ocean Color Data Coverage through Machine Learning, Shuangling Chen, Chuanmin Hu, Brian B. Barnes, Yuyuan Xie, Gong Lin, and Zhongfeng Qiu

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Vehicle Forward Collision Warning Algorithm Based on Road Friction, Tao Chen, Ka Liu, Zhenyu Wang, Gang Deng, and Bin Chen

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Exploring the Equity Performance of Bike-Sharing Systems with Disaggregated Data: A Story of Southern Tampa, Zhiwei Chen, Yujie Guo, Amy L. Stuart, Yu Zhang, and Xiaopeng Li

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Statistical Simulation of Ocean Current Patterns Using Autoregressive Logistic Regression Models: a Case Study in the Gulf of Mexico, Helios Chiri, Ana J. Abascal, Sonia Castanedo, José A. A. Antolínez, Yonggang Liu, Robert H. Weisberg, and Raul Medina

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Calling: Earth #011 - Jennifer Collins, Meteorologist, Jennifer Collins

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The 2015 Hurricane Season in the North Atlantic: An Analysis of Environmental Conditions, Jennifer Collins and David R. Roache

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Florida Weather and Climate: More than just Sunshine, Jennifer Collins, Robert V. Rohli, and Charles H. Paxton

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Hurricane Risk, Jennifer Collins and Kevin Walsh

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Love is Exhaustion, Brian Connolly

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Revisiting Psychoanalytic History, Brian Connolly

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The Subterranean Life of Repression, Brian Connolly

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Modelling Tephra Thickness and Particle Size Distribution of the 1913 Eruption of Volcán de Colima, Mexico, Charles B. Connor, Laura J. Connor, C. Bonadonna, J. Luhr, I. P. Savov, and C. Navarro-Ochoa

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Tracing and Constraining Anthropogenic Aerosol Iron Fluxes to the North Atlantic Ocean using Iron Isotopes, Tim Conway, Douglas S. Hamilton, Rachel U. Shelley, Ana M. Aguilar-Islas, William M. Landing, Natalie M. Mahowald, and Seth G. John

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The CARICOMP Network of Caribbean Marine Laboratories (1985–2007): History, Key Findings, and Lessons Learned, Jorge Cortes, Hazel A. Oxenford, Brigitta I. van Tussenbroek, Eric Jordan-Dahlgren, Aldo Croquer, Carolina Bastidas, and John C. Ogden

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Population Fragmentation Leads to Morpho-Functional Variation in British Red Squirrels (Sciurus vulgaris), Philip G. Cox, Philip J.R. Morris, and Andrew C. Kitchener

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Evaluation of Florida Stone Crab Life History and Management Scenarios using Spawning Potential Ratios, Claire E. Crowley, David Chagaris, Ryan L. Gandy, and Kendra L. Daly

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Fecundity Assessment of Stone Crabs in the Eastern Gulf of Mexico, Claire E. Crowley, Colin P. Shea, Ryan L. Gandy, and Kendra L. Daly

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High-Resolution DEM Generation from Spaceborne and Terrestrial Remote Sensing Data for Improved Volcano Hazard Assessment — A Case Study at Nevado del Ruiz, Colombia, Fanghui Deng, Mel Rodgers, Surui Xie, Timothy Dixon, Sylvain J. Charbonnier, Elisabeth Gallant, Christian Mauricio López Vélez, Milton Ordoñez, Rocco Malservisi, Nicholas K. Voss, and Jacob A. Richardson

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Queer Theory, J. Michael Denton

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Review of Queer People of Color in Higher Education, J. Michael Denton

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Enhanced Glacial Discharge from the Eastern Antarctic Peninsula since the 1700s Associated with a Positive Southern Annular Mode, W. A. Dickens, G. Kuhn, M. J. Leng, Alastair G. C. Graham, J. A. Dowdeswell, M. P. Meredith, C.-D. Hillenbrand, D. A. Hodgson, S. J. Roberts, H. Sloane, and J. A. Smith

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USFT Digital Scholarship Services Annual Report: FY 2018-2019, Digital Scholarship Services

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Whole Genome Sequencing Identifies Bacterial Factors Affecting Transmission of Multidrug-Resistant Tuberculosis in a High-Prevalence Setting, Avika Dixit, Luca Freschi, Roger Vargas, Roger Calderon, James Sacchettini, Francis Drobniewski, Jerome Galea, Carmen Contreras, Rosa Yataco, and Zibiao Zhang

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Aragonite Dissolution Kinetics and Calcite/aragonite Ratios in Sinking and Suspended Particles in the North Pacific, Sijia Dong, William M. Berelson, Nick E. Rollins, Adam V. Subhas, John D. Naviaux, Aaron J. Celestian, Xuewu Liu, Nitya Turaga, Nathaniel J. Kemnitz, Robert H. Byrne, and Jess F. Adkins

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Coral Reef Geomorphology of the Spratly Islands: A Simple Method Based on Time-Series of Landsat-8 Multi-Band Inundation Maps, Yanzhu Dong, Yongxue Liu, Chuanmin Hu, and Bihua Xu

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Urban Trees, House Price, and Redevelopment Pressure in Tampa, Florida, Geoffrey H. Donovan, Shawn Landry, and Cody Winter

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Calling: Earth #014 - Christine Downs, Geophysicist, Christine Downs

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Calling: Earth #007 - Joni Downs Firat, Wildlife Ecologist, Joni A. Downs

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Where and with Whom Students Live: Impacts on Peer Belonging and Institutional Acceptance, Amber D. Dumford, Amy K. Ribera, and Angie L. Miller

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Constraints on Global Mean Sea Level During Pliocene Warmth, Oana A. Dumitru, Jacqueline Austermann, Victor J. Polyak, Joan J. Fornós, Yemane Asmerom, Joaquín Ginés, Angel Ginés, and Bogdan P. Onac

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Cognitive Science and Social Theory, David Eck and Stephen Turner

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Keeping an Eye on Antarctic Ice Sheet Stability, Carlota Escutia, Robert M. DeConto, Robert Dunbar, Laura De Santis, Amelia E. Shevenell, and Timothy Naish

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Zonal Jets in the Laboratory: Experiments with Electromagnetically Forced Flows, Stefania Espa, Gabriella Di Nitto, Boris Galperin, and Jesse Hoemann

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The Origin of Blue Coloration in a Fulgurite from Marquette, Michigan, Tian Feng, Carolyn Lang, and Matthew A. Pasek

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Carbon Cycling in the North American Coastal Ocean: A Synthesis, Katja Fennel, Simone Alin, Leticia Barbero, Wiley Evans, Timothée Bourgeois, Sarah Cooley, Frank E. Muller-Karger, and Lisa Robbins

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Shifting Ground: Landscape-Scale Modeling of Biogeochemical Processes under Climate Change in the Florida Everglades, Hilary Flower, Mark Rains, H. C. Fitz, William Orem, Susan Newman, Todd Z. Osborne, K. R. Reddy, and Jayantha Obeysekera

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100 Years and Counting, Sondra J. Fogel

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Beyond Screening: A Call for the Routine Integration of Mental Health Care with Tuberculosis Treatment, Jerome Galea, I. Monedero-Recuero, and A. C. Sweetland

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Life-Threatening Allergies: Using a Patient-Engaged Approach, Joel Louis Gallagher, Robert David Rivera, Kirk Van Shepard, Tanvir Roushan, Golam Ahsan, Sheikh Iqbal Ahamed, Asriani Chiu, Mary Jurken, Pippa Margaret Simpson, Melodee Nugent, Karina Shah Gobin, Cheng K Fred Wen, and Christina E. Eldredge

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Calling: Earth #001 - Lis Gallant, Volcanologist, Elisabeth Gallant

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Zonal Jets: Phenomenology, Genesis, and Physics, Boris Galperin and Peter L. Read