Abstract
Illumina high-throughput RNA sequencing technology was used to sequence, assemble and annotate the transcriptome of three tissues; liver, gonad, and head kidney from Sciaenops ocellatus.
Purpose
Identifying and annotating red drum transcriptomes from different tissues provides basic functional genomic information for each tissue and enhances the opportunities for genetic improvement of red drum for aquaculture production, stock enhancements of wild populations and for future studies using red drum as a model.
Keywords
Red drum, RNA-seq, Sciaenops ocellatus
UDI
R4.x267.000:0045
Date
May 2018
Point of Contact
Name
Dana Wetzel
Organization
Mote Marine Laboratory / Environmental Laboratory of Forensics Program
Funding Source
RFP-4
DOI
10.7266/N7CC0Z40
Rights Information
This work is licensed under a
Creative Commons Public Domain Dedication 1.0 License.
Scholar Commons Citation
Tracy Sherwood, Dana Wetzel. 2018. RNA-seq transcriptome characterization of liver, gonad, and head kidney from control and intraperitoneal oil-injected sub-adult male red drum. Distributed by: Gulf of Mexico Research Initiative Information and Data Cooperative (GRIIDC), Harte Research Institute, Texas A&M University–Corpus Christi. doi:10.7266/N7CC0Z40
Comments
Extent
Dataset contains laboratory measurements of transcriptomes of three tissues, no field sampling involved.
Supplemental Information
NCBI Biosample Accession, NCBI Experiment, Library name, MBases, MBytes, Run, SRA Sample Accession, Tissue, Assay type, NCBI bioproject accession, Instrument, Library layout, Library source, Load date, Organism, Platform, Release date, Development stage, Sex Biosample accessions exposed to crude oil: SAMN07432053, SAMN07431991, SAMN07431851, other accessions represent control animals|Male fish were reared from broodstock at the Mote Marine Aquaculture park. The male that received an IP injection consisted of 1 part southern Louisiana crude oil to two parts corn oil at 2 ml/kg weight of fish.||||