This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2015

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A New Compact Rotating Video System for Rapid Survey of Reef Fish Populations, Christopher C. Koenig and Christopher D. Stallings

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Coastal Ocean Forecasting: Science Foundation and User Benefits, V. H. Kourafalou, P. De Mey, J. Staneva, N. Ayoub, A. Barth, and Robert H. Weisberg

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Elemental Signature of Terrigenous Sediment Runoff as Recorded in Coastal Salt Ponds: US Virgin Islands, Rebekka Larson, Gregg Brooks, Barry Devine, Patrick Schwing, Charles W. Holmes, Tom Jilbert, and Gert-Jan Reichart

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Relation Between Inherent Optical Properties and Land Use and Land Cover across Gulf Coast Estuaries, Chengfeng Le, John C. Lehrter, Chuanmin Hu, Blake Schaeffer, Hugh MacIntyre, James D. Hagy, and David L. Beddick

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The Observed State of the Energy Budget in the Early Twenty-First Century, Tristan S. L’Ecuyer, H. K. Beaudoing, M. Rodell, W. Olson, B. Lin, S. Kato, C. A. Clayson, E. Wood, J. Sheffield, R. Adler, G. Huffman, M. Bosilovich, G. Gu, F. Robertson, P. R. Houser, D. Chambers, J. S. Famiglietti, E. Fetzer, W. T. Liu, X. Gao, C. A. Schlosser, E. Clark, D. P. Lettenmaier, and K. Hilburn

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Secchi Disk Depth: A New Theory and Mechanistic Model for Underwater Visibility, ZhongPing Lee, Shaoling Shang, Chuanmin Hu, Keping Du, Alan Weidemann, Weilin Hou, Junfang Lin, and Gong Lin

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Sabrina Coast Marine Record of Cryosphere – Ocean Dynamics, Amy Leventer, E. Domack, Sean P.S. Gulick, B. Huber, A. Orsi, and Amelia E. Shevenell

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An Automated Procedure for Laboratory and Shipboard Spectrophotometric Measurements of Seawater Alkalinity: Continuously Monitored Single-step Acid Additions, Xuewu Liu, Robert H. Byrne, Michael Lindemuth, Regina Easley, and Jeremy T. Mathis

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Potential Impact of Climate Change on the Intra-Americas Sea: Part-1. a Dynamic Downscaling of the Cmip5 Model Projections, Y. Liu, S. K. Lee, D. B. Enfield, B. A. Muhling, J. T. Lamkin, Frank E. Muller-Karger, and M. A. Roffer

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Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Introduction to Coastal Ocean Observing Systems, Yonggang Liu, Heather Kerkering, and Robert H. Weisberg

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Glider Salinity Correction for Unpumped Ctd Sensors across a Sharp Thermocline, Yonggang Liu, Robert H. Weisberg, and Chad Lembke

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Organic Ligands- A Key Control on Trace Metal Biogeochemistry in the Oceans, Maeve Lohan and Kristen N. Buck

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Characterization of Phytoplankton Variability in the Cariaco Basin Using Spectral Absorption, Taxonomic and Pigment Data, Laura Lorenzoni, G. Toro-Farmer, R. Varela, L. Guzman, J. Rojas, Enrique Montes, and Frank E. Muller-Karger

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Natural and Unnatural Oil Slicks in the Gulf of Mexico, I. R. MacDonald, O. Garcia-Pineda, A. Beet, S. Daneshgar, L. Feng, G. Graettinger, D. French-Mccay, J. Holmes, Chuanmin Hu, F. Huffer, I. Leifer, Frank E. Muller-Karger, A. Solow, M. Silva, and G. Swayze

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Using Ocean Bottom Pressure from the Gravity Recovery and Climate Experiment (GRACE) to Estimate Transport Variability in the Southern Indian Ocean, Jessica K. Makowski, Don P. Chambers, and Jennifer A. Bonin

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Symposium on “Climate Change and Molluscan Ecophysiology” at the 79th Annual Meeting of the American Malacological Society, Peter B. Marko, Emily Carrington, Rui Rosa, Folco Giomi, Sandra Troschinski, Frank Melzner, and Brad A. Seibel

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Technology for Ocean Acidification Research: Needs and Availability, Todd R. Martz, Kendra L. Daly, Robert H. Byrne, Jonathan H. Stillman, and Daniela Turk

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Improved Coastal Wetland Mapping Using Very-High 2-Meter Spatial Resolution Imagery, M. J. McCarthy, E. J. Merton, and Frank E. Muller-Karger

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Sand Patties Provide Evidence for the Presence of Deepwater Horizon Oil on the Beaches of the West Florida Shelf, Lauren McDaniel, J Basso, Erin Pulster, and John H. Paul

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Foraminiferal Assemblage Indices: A Comparison of Sediment and Reef Rubble Samples from Conch Reef, Florida, USA, Christy McNey Stephenson, Pamela Hallock, and Francisco Kelmo

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Sea Level Variability and Change, M. A. Merrifield, P. Thompson, G. T. Mitchum, D. P. Chambers, S. Jevrejeva, R. S. Nerem, M. Menéndez, W. Sweet, B. Hamlington, and J. J. Marra

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Effect of Radio Frequency Interference (RFI) Noise Energy on WERA Performance Using the "Listen Before Talk" Adaptive Noise Procedure on the West Florida Shelf, Clifford R. Merz, Yonggang Liu, Klaus-Werner Gurgel, Leif Peterson, and Robert H. Weisberg

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Observations of Hysteresis in the Annual Exchange Circulation of a Large Microtidal Estuary, Steven D. Meyers, Monica Wilson, and Mark E. Luther

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Intercomparison of Dissolved Trace Elements at the Bermuda Atlantic Time Series Station, R. Middag, R. Séférian, Tim M. Conway, Seth G. John, K. W. Bruland, and H. J. W. de Baar

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Coral Regeneration Assay, Elizabeth F. Moses and Pamela Hallock

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Ciliated Protists from the Nepheloid Layer and Water Column of Sites Affected by the Deepwater Horizon Oil Spill in the Northeastern Gulf of Mexico, Joseph A. Moss, Chelsea McCurry, Sarah Tominack, Isabel C. Romero, David Hollander, Wade H. Jeffrey, and Richard A. Snyder

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Aquatic Color Radiometry Remote Sensing of Coastal and Inland Waters: Challenges and Recommendations for Future Satellite Missions, Colleen B. Mouw, Steven Greb, Dirk Aurin, Paul M. DiGiacomo, Zhongping Lee, Michael Twardowski, Caren Binding, Chuanmin Hu, Ronghua Ma, Timothy Moore, Wesley Moses, and Susanne E. Craig

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Potential Impact of Climate Change on the Intra-Americas Sea: Part 2. Implications for Atlantic Bluefin Tuna and Skipjack Tuna Adult and Larval Habitats, B. A. Muhling, Y. Liu, S. K. Lee, J. T. Lamkin, M. A. Roffer, Frank E. Muller-Karger, and J. F. Walter

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Natural Variability of Surface Oceanographic Conditions in the Offshore Gulf of Mexico, Frank E. Muller-Karger, J. P. Smith, S. Werner, R. Chen, M. Roffer, Y. Liu, B. Muhling, D. Lindo-Atichati, J. Lamkin, S. Cerdeira-Estrada, and D. B. Enfield

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Enhancing the Ocean Observing System to Meet Restoration Challenges in the Gulf of Mexico, Steven Murawski and William T. Hogarth

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Shoreface Response and Recovery to Hurricane Sandy; Fire Island, NY, Timothy R. Nelson and Cheryl J. Hapke

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Nutrients in the Open Ocean, Claire Parker, Kristen N. Buck, and Katherine Barbeau

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Internal Consistency of Marine Carbonate System Measurements and Assessments of Aragonite Saturation State: Insights from Two U.S. Coastal Cruises, Mark C. Patsavas, Robert H. Byrne, Rik Wanninkhof, Richard A. Feely, and Wei-Jun Cai

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Procedures for Direct Spectrophotometric Determination of Carbonate Ion Concentrations: Measurements in US Gulf of Mexico and East Coast Waters, Mark C. Patsavas, Robert H. Byrne, Bo Yang, Regina A. Easley, Rik Wanninkhof, and Xuewu Liu

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Phytoplankton Community Structure and Depth Distribution Changes in the Cariaco Basin between 1996 and 2010, J. L. Pinckney, C. R. Benitez-Nelson, R. C. Thunell, Frank E. Muller-Karger, Laura Lorenzoni, L. Troccoli, and R. Varela

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Interpretation of Complexometric Titration Data: An Intercomparison of Methods for Estimating Models of Trace Metal Complexation by Natural Organic Ligands, Ivanka Pižeta, Sylvia Sander, Robert Hudson, Dario Omanović, Oliver Baars, Katherine Barbeau, Kristen N. Buck, Randelle Bundy, Gonzalo Carrasco, Peter Croot, Cédric Garnier, Louise Gerringa, Martha Gledhill, Katsumi Hirose, Yoshiko Kondo, Luis Laglera, Jochen Nuester, Micha Rijkenberg, Shigenobu Takeda, Benjamin Twining, and Mona C. Wells Mona C. Wells

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Molecular Surveillance of Plant Viruses: Identification of New and Emerging Viruses of Tomato Before They Cause Epidemics, J. Polston, Karyna Rosario, and Mya Breitbart

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Chemical Speciation of Environmentally Significant Metals: An IUPAC Contribution to Reliable and Rigorous Computer Modelling, Kipton J. Powell, Paul L. Brown, Robert H. Byrne, Tamas Gajda, Glenn Hefter, Ann-Kathrin Leuz, Staffan Sjöberg, and Hans Wanner

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VIIRS Observations of a Karenia brevis Bloom in the Northeastern Gulf of Mexico in the Absence of a Fluorescence Band, Lin Qi, Chuanmin Hu, Jennifer Cannizzaro, Alina A. Corcoran, David English, and Chengfeng Le

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Influence of Particle Composition on Remote Sensing Reflectance and MERIS Maximum Chlorophyll Index Algorithm: Examples From Taihu Lake and Chaohu Lake, Lin Qi, Chuanmin Hu, Hongtao Duan, Yuchao Zhang, and Ronghua Ma

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δ13C and δ15N in Deep-Living Fishes and Shrimps after the Deepwater Horizon Oil Spill, Gulf of Mexico, Ester Quintana-Rizzo, Joseph J. Torres, Steve W. Ross, Isabel Romero, Kathleen Watson, Ethan Goddard, and David Hollander

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The Isotopic Signature and Distribution of Particulate Iron in the North Atlantic Ocean, Brandi N. Revels, Daniel C. Ohnemus, Phoebe J. Lam, Tim M. Conway, and Seth G. John

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The Observed State of the Water Cycle in the Early Twenty-First Century, M. Rodell, H. K. Beaudoing, T. S. L’Ecuyer, W. S. Olson, J. S. Famiglietti, P. R. Houser, R. Adler, M. G. Bosilovich, C. A. Clayson, D. Chambers, E. Clark, E. J. Fetzer, X. Gao, G. Gu, K. Hilburn, G. J. Huffman, D. P. Lettenmaier, W. T. Liu, F. R. Robertson, C. A. Schlosser, J. Sheffield, and E. F. Wood

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Tracking the Hercules 265 Marine Gas Well Blowout in the Gulf of Mexico, Isabel C. Romero, Tamay Özgökmen, Susan Snyder, Patrick Schwing, Bryan J. O'Malley, Francisco J. Beron‐Vera, Maria J. Olascoaga, Ping Zhu, Edward Ryan, Shuyi S. Chen, Dana L. Wetzel, David Hollander, and Steven Murawski

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Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, and David Hollander

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Novel Circular Single-stranded DNA Viruses Identified in Marine Invertebrates Reveal high Sequence Diversity and Consistent Predicted Intrinsic Disorder Patterns within Putative Structural Proteins, Karyna Rosario, Ryan Schenck, Rachel Harbeitner, Stephanie Lawler, and Mya Breitbart

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Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds, Karyna Rosario, Yee Mey Seah, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane Polston, and Siobain Duffy

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The Effect of Natural Organic Ligands on Trace Metal Speciation in San Francisco Bay: Implications for Water Quality Criteria, Sylvia Sander, Kristen N. Buck, and Mona Wells

Phytoplankton Blooms: New Initiative Using Marine Optics as a Basis for Monitoring Programs, E. Santamaría-del-Angel, I. Soto, R. Millán-Nuñez, A. González-Silvera, J. Wolny, S. Cerdeira-Estrada, R. Cajal-Medrano, Frank E. Muller-Karger, Jennifer Cannizzaro, Y. XS Padilla-Rosas, A. Mercado-Santana, F. F. Gracia-Escobar, P. Alvarez-Torres, and M. C. Ruiz-de-la-Torre

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YREE Scavenging in Seawater: A New Look at an Old Model, Johan Schijf, Emily A. Christenson, and Robert H. Byrne

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A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebekka A. Larson, and David Hollander

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A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel C. Romero, Gregg R Brooks, David W Hastings, Rebekka A Larson, and David Hollander

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Environmental Physiology of the Jumbo Squid, Dosidicus gigas (d'Orbigny, 1835) (Cephalopoda: Ommastrephidae): Implications for Changing Climate, Brad A. Seibel

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Autobiographical Sketches: Women in Oceanography: 10 Years Later, Amelia E. Shevenell

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Southern Exposure: New Paleoclimate Insights From Southern Ocean and Antarctic Margin Sediments, Amelia E. Shevenell and Steven M. Bohaty

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PAH Exposure in Gulf of Mexico Demersal Fishes, Post-Deepwater Horizon, Susan M. Snyder, Erin Pulster, Dana L Wetzel, and Steven A. Murawski

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Evaluation and Optimization of Remote Sensing Techniques for Detection of Karenia Brevis Blooms on the West Florida Shelf, I. M. Soto, Jennifer Cannizzaro, Frank E. Muller-Karger, Chuanmin Hu, J. Wolny, and Dmitry Goldgof

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Faunal Communities and Habitat Characteristics of the Big Bend Seagrass Meadows, 2009–2010., Christopher D. Stallings, Alejandra Mickle, James A. Nelson, Michael G. McManus, and Christopher C. Koenig

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Effects of Preservation Methods of Muscle Tissue from Upper-trophic Level Reef Fishes on Stable Isotope Values (δ13C and δ15N), Christopher D. Stallings, James A. Nelson, Katherine L. Rozar, Charles S. Adams, Kara R. Wall, Theodore S. Switzer, Brent L. Winner, and David J. Hollander

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Estimating Phycocyanin Pigment Concentration in Productive Inland Waters using Landsat Measurements: A Case Study in Lake Dianchi, Deyong Sun, Chuanmin Hu, Zhongfeng Qiu, and Kun Shi

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Reconstruction of Hyperspectral Reflectance for Optically Complex Turbid Inland lakes: Test of a New Scheme and Implications for Inversion Algorithms, Deyong Sun, Chuanmin Hu, Zhongfeng Qiu, and Shengqiang Wang

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Review of Wave-turbulence Interactions in the Stable Atmospheric Boundary Layer, Jielun Sun, Carmen J. Nappo, Larry Mahrt, Danijel Belušić, Branko Grisogono, David R. Stauffer, Manuel Pulido, Chantal Staquet, Qingfang Jiang, Annick Pouquet, Carlos Yagüe, Boris Galperin, Ronald B. Smith, John J. Finnigan, Shane D. Mayor, Gunilla Svensson, Andrey A. Grachev, and William D. Neff

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Surface Oil Footprint and Trajectory of the Ixtoc-I Oil Spill Determined from Landsat/MSS and CZCS Observations, Shaojie Sun, Chuanmin Hu, and John W. Tunnell

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Strategic Assessment of Fisheries Independent Monitoring Programs in the Gulf of Mexico, Paul Mark Suprenand, Michael Drexler, David L. Jones, and Cameron H. Ainsworth

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Reduction of Nutrients, Microbes, and Personal Care Products in Domestic Wastewater by a Benchtop Electrocoagulation Unit, E. Symonds, M. Cook, S. McQuaig, R. Ulrich, R. Schenck, J. Lukasik, E. Van Vleet, and Mya Breitbart

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Affordable Enteric Virus Detection Techniques Are Needed to Support Changing Paradigms in Water Quality Management, Erin M. Symonds and Mya Breitbart

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Methodical Assessment of the Differences Between the QNSE and MYJ PBL Schemes for Stable Conditions, Esa-Matti Tastula, Boris Galperin, Jimy Dudhia, Margaret A. LeMone, Semion Sukoriansky, and Timo Vihma

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The Importance of Surface Layer Parameterization in Modeling of Stable Atmospheric Boundary Layers, Esa-Matti Tastula, Boris Galperin, Semion Sukoriansky, Ashok Luhar, and Phil Anderson

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The GEOTRACES Intermediate Data Product 2014, The GEOTRACES Group and Tim M. Conway

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Radiocarbon Dating and Calibration, Torbjörn E. Törnqvist, Brad E. Rosenheim, Ping Hu, and Alvaro B. Fernandez

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Whither the U.S. National Ocean Policy Implementation Plan?, H. Torres, Frank E. Muller-Karger, D. Keys, H. Thornton, Mark E. Luther, and K. Alsharif

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An Ethogram of the Humboldt Squid Dosidicus gigas Orbigny (1835) as Observed from Remotely Operated Vehicles, Lloyd A. Trueblood, Sarah Zylinski, Bruce H. Robison, and Brad A. Seibel

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Community Metabolism in Shallow Coral Reef and Seagrass Ecosystems, Lower Florida Keys, D. Turk, K. K. Yates, M. Vega-Rodriguez, G. Toro-Farmer, C. L'Esperance, N. Melo, D. Ramsewak, M. Dowd, S. C. Estrada, Frank E. Muller-Karger, S. R. Herwitz, and W. R. McGillis

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Non-lethal Approach Identifies Variability of δ15N Values in the Fin Rays of Atlantic Goliath Grouper, Epinephelus itajara, Orian E. Tzadik, Ethan A. Goddard, David J. Hollander, Christopher C. Koenig, and Christopher D. Stallings

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The Effects of Geomorphic Changes during Hurricane Sandy on Water Levels in Great South Bay, Maarten van Ormondt, Cheryl Hapke, Dano Roelvink, and Tim Nelson

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Influence of Water-Temperature Variability on Stony Coral Diversity in Florida Keys Patch Reefs, M. Vega-Rodriguez, Frank E. Muller-Karger, P. Hallock, G. A. Quiles-Perez, C. M. Eakin, M. Colella, D. L. Jones, J. Li, I. Soto, L. Guild, S. Lynds, and R. Ruzicka

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Evidence for Multidecadal Variability in US Extreme Sea Level Records, Thomas Wahl and Don P. Chambers

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Increasing risk of Compound Flooding from Storm Surge and Rainfall for Major US Cities, Thomas Wahl, Shaleen Jain, Jens Bender, Steven D. Meyers, and Mark E. Luther

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A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, J. J. Walsh, J. M. Lenes, B. P. Darrow, A. A. Parks, Robert H. Weisberg, Lianyuan Zheng, C. Hu, B. B. Barnes, Kendra L. Daly, and S. I. Shin

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A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, Robert H. Weisberg, Lianyuan Zheng, and Chuanmin Hu

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Extracting Oil Slick Features From VIIRS Nighttime Imagery Using a Gaussian Filter and Morphological Constraints, Mengqiu Wang and Chuanmin Hu

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Ocean Acidification along the Gulf Coast and East Coast of the USA, Rik Wanninkhof, Leticia Barbero, Robert Byrne, Wei-Jun Cai, Wei-Jen Huang, Jia-Zhong Zhang, Molly Baringer, and Chris Langdon

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Basic Tenets for Coastal Ocean Ecosystems Monitoring, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

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What Happens to Soil Organic Carbon as Coastal Marsh Ecosystems Change in Response to Increasing Salinity? An Exploration using Ramped Pyrolysis, Elizabeth K. Williams and Brad E. Rosenheim

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Quantification of Refractory Organic Material in Amazon Mudbanks of the French Guiana Coast, Elizabeth K. Williams, Brad E. Rosenheim, Mead Allison, Ann P. McNichol, and Li Xu

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Quantifying Anthropogenic Carbon Inventory Changes in the Pacific Sector of the Southern Ocean, Nancy L. Williams, Richard A. Feely, Christopher L. Sabine, Andrew G. Dickson, James H. Swift, Lynne D. Talley, and Joellen L. Russell

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Application of Bayesian Networks to Hindcast Barrier Island Morphodynamics, Kathleen E. Wilson, Peter N. Adams, Cheryl J. Hapke, Erika E. Lentz, and Owen Brenner

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Potential Habitat of Acropora spp. on Reefs of Florida, Puerto Rico, and the US Virgin Islands, Katherine Wirt

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World’s Largest Macroalgal Blooms Altered Phytoplankton Biomass in Summer in the Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, and Xuelu Gao

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Contributions of Organic Alkalinity to Total Alkalinity in Coastal Waters: A Spectrophotometric Approach, Bo Yang, Robert H. Byrne, and Michael Lindemuth

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Subannual Variability of Total Alkalinity Distributions in the Northeastern Gulf of Mexico, Bo Yang, Robert H. Byrne, and Rik Wanninkhof

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Atmospheric Correction of Aisa Measurements Over the Florida Keys Optically Shallow Waters: Challenges in Radiometric Calibration and Aerosol Selection, Mingrui Zhang, Chuamin Hu, D. English, P. Carlson, Frank E. Muller-Karger, G. Toro-Farmer, and S. R. Herwitz

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Influences of Channel Deepening and Widening on the Tidal and Nontidal Circulations of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Flushing of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

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On the Salt Balance of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Hongshuai Qi

Submissions from 2014

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Productivity and Linkages of the Food Web of the Southern Region of the Western Antarctic Peninsula Continental Shelf, Tosca Ballerini, Eileen E. Hofmann, David G. Ainley, Kendra L. Daly, Marina Marrari, Christine A. Ribic, Walker O. Smith Jr., and John H. Steele

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Development of the Coastal Storm Modeling System (CoSMoS) for Predicting the Impact of Storms on High-energy, Active-margin Coasts, Patrick L. Barnard, Maarten van Ormondt, Li H. Erikson, Jodi Eshleman, Cheryl Hapke, Peter Ruggiero, Peter N. Adams, and Amy C. Foxgrover

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Use of Landsat Data to Track Historical Water Quality Changes in Florida Keys Marine Environments, Brian B. Barnes, Chuanmin Hu, Kara L. Holekamp, Slawomir Blonski, Bruce A. Spiering, David Palandro, and Brian Lapointe

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Estimation of Diffuse Attenuation of Ultraviolet Light in Optically Shallow Florida Keys Waters from Modis Measurements, Brian Burnel Barnes, Chuanmin Hu, Jennifer P. Cannizzaro, Susanne E. Craig, David L. Jones, John C. Lehrter, Nelson Melo, Blake A. Schaeffer, and Richard Zepp