Submissions from 2020
Surface Runoff Alters Cave Microbial Community Structure and Function, Madison Davis, Maria A. Messina, Giuseppe Nicolosi, Salvatore Petralia, Melvin D. Baker, Christiana K. S. Mayne, Chelsea M. Dinon, Christina J. Moss, Bogdan P. Onac, and James R. Garey
Draft Genome Sequence of Verrucosispora sp. Strain CWR15, Isolated from a Gulf of Mexico Sponge, Sarah J. Kennedy, Eleonora Cella, Mohammad Jubair, Taj Azarian, Bill J. Baker, and Lindsey N. Shaw
miR146a-mediated Targeting of FANCM during Inflammation Compromises Genome Integrity, Devakumar Sundaravinayagam, Hye Rim Kim, TingTing Wu, Hyun Hee Kim, Semo Jun, Jeong-Heon Cha, Younghoon Kee, Ho Jin You, and Jung-Hee Lee
Submissions from 2019
Functional Inhibition of Acid Sphingomyelinase Disrupts Infection by Intracellular Bacterial Pathogens, Chelsea L. Cockburn, Ryan S. Green, Sheela R. Damle, Rebecca K. Martin, Naomi N. Ghahrai, Punsiri M. Colonne, Marissa S. Fullerton, Daniel H. Conrad, Charles E. Chalfant, Daniel E. Voth, Elizabeth A. Rucks, Stacey D. Gilk, and Jason A. Carlyon
The OTUD5–UBR5 Complex Regulates FACT-mediated Transcription at Damaged Chromatin, Angelo de Vivo, University of South Florida, Jose Yegres, Jeonghyeon Kim, Sylvia Emly, and Younghoon Kee
Structural basis of phosphatidylcholine recognition by the C2–domain of cytosolic phospholipase A,2α, Yoshinori Hirano, Yong-Guang Gao, Daniel J. Stephenson, Ngoc T. Vu, Lucy Malinina, Dhirendra K. Simanshu, Charles E. Chalfant, Dinshaw J. Patel, and Rhoderick E. Brown
Submissions from 2018
Inhibition of Atypical Protein Kinase C‑ι Effectively Reduces the Malignancy of Prostate Cancer cells by Downregulating the NF-κB Signaling Cascade, André H. Apostolatos, Wishrawana Sarathi Bandara Ratnayake, Hla Win-Piazza, Christopher A. Apostolatos, Tracess Smalley, Loveleen Kang, Raoul Salup, Robert Hill, and Mildred Acevedo-Duncan
Machine Learning Approaches to Evaluate Correlation Patterns in Allosteric Signaling: A Case Study of the PDZ2 Domain, Mohsen Botlani-Esfahani, Anhaf Siddiqui, and Sameer Varma
Coffee Extract and Caffeine Enhance the Heat Shock Response and Promote Proteostasis in an HSF-1-dependent Manner in Caenorhabditis elegans, Jessica Brunquell, Stephanie Morris, Alana Snyder, and Sandy D. Westerheid
CCAR‐1 is a Negative Regulator of the Heat‐Shock Response in Caenorhabditis elegans, Jessica Brunquell, Rachel Raynes, Philip Bowers, Stephanie Morris, Alana Snyder, Doreen Lugano, Andrew Deonarine, and Sandy D. Westerheide
Sgs1 Binding to Rad51 Stimulates Homology-Directed DNA Repair in Saccharomyces cerevisiae, Lillian Campos-Doerfler, Salahuddin Syed, and Kristina H Schmidt
Microbial Function and Hydrochemistry within a Stratified Anchialine Sinkhole: A Window into Coastal Aquifer Interactions, Madison Davis and James R. Garey
An Essential Staphylococcus aureus Cell Division Protein directly Regulates FtsZ Dynamics, Prahathees J. Eswara, Robert S. Brzozowski, Marissa G. Viola, Gianni Graham, Catherine Spanoudis, Catherine Trebino, Jyoti Jha, Joseph I. Aubee, Karl M. Thompson, Jodi L. Camberg, and Kumaran S. Ramamurthi
Identification of a Novel Polyamine Scaffold With Potent Efflux Pump Inhibition Activity Toward Multi-Drug Resistant Bacterial Pathogens, Renee Fleeman, Ginamarie Debevec, Kirsten Antonen, Jessie Adams, Radleigh G. Santos, Gregory S. Welmaker, Richard A. Houghten, Marc A. Guilianotti, and Lindsey N. Shaw
moDCs, Less Problems, Alycia Gardner and Brian Ruffell
Evidence for Inhibition of Topoisomerase 1A by Gold(III) Macrocycles and Chelates Targeting Mycobacterium tuberculosis and Mycobacterium abscessus, Rashmi Gupta, Carolina Rodrigues Felix, Matthew P. Akerman, Kate J. Akerman, Cathryn A. Slabber, Wenjie Wang, Jessie Adams, and Lindsey N. Shaw
Mbd2-CP2c loop drives adult-type globin Gene Expression and Definitive Erythropoiesis, Min Young Kim, Ji Sook Kim, Seung Han Son, Chang Su Lim, Hea Young Eum, Dae Hyun Ha, Mi Ae Park, Eun Jung Baek, Buom-Yong Ryu, Ho Chul Kang, Vladimir N. Uversky, and Chul Geun Kim
In Vivo Metabolic Tracing Demonstrates the Site‐Specific Contribution of Hepatic Ethanol Metabolism to Histone Acetylation, Crystina L. Kriss, Emily Gregory-Lott, Aaron J. Storey, Alan J. Tackett, Wayne P. Wahls, and Stanley M. Stevens Jr.
Circulating PANDER Concentration is Associated with Increased HbA1c and Fasting Blood Glucose in Type 2 Diabetic Subjects, Catherine B. MarElia, Melanie N. Kuehl, Tiffany A. Shemwell, Amy C. Alman, and Brant R. Burkhardt
Anemarrhena asphodeloides Bunge and its Constituent Timosaponin‐AIII induce Cell Cycle Arrest and Apoptosis in Pancreatic Cancer Cells, Catherine B. MarElia, Arielle Sharp, Tiffany A. Shemwell, Y. C. Zhang, and Brant R. Burkhardt
Identification of a unique transcriptional architecture for the sigS operon in Staphylococcus aureus, Halie Kay Miller, Whittney Burda, Ronan K. Carroll, and Lindsey N. Shaw
CPTP: A Sphingolipid Transfer Protein that Regulates Autophagy and Inflammasome Activation, Shrawan K. Mishra, Yong-Guang Gao, Yibin Deng, Charles E. Chalfant, Edward H. Hinchcliffe, and Rhoderick E. Brown
Uncoupling the Folding and Binding of an Intrinsically Disordered Protein, Anusha Poosapati, Emily Gregory, Wade M. Borcherds, Lucia B. Chemes, and Gary Daughdrill
Links Between Iron and Lipids: Implications in Some Major Human Diseases, Stephanie Rockfield, Ravneet Chhabra, Michelle Robertson, Nabila Rehman, Richa Bisht, and Meera Nanjundan
Expression and Function of Nuclear Receptor Coactivator 4 Isoforms in Transformed Endometriotic and Malignant Ovarian Cells, Stephanie Rockfield, Idhaliz Flores, and Meera Nanjundan
Molecular Basis for the Hierarchical Dependency of Collagen Mechanics, Sameer Varma, Joseph P R O Orgel, and Jay D Schieber
GEsture: An Online Hand-Drawing Tool for Gene Expression Pattern Search, Chunyan Wang, Yiqing Xu, Xuelin Wang, Li Zhang, Suyun Wei, Qiaolin Ye, Youxiang Zhu, Hengfu Yin, Manoj Nainwal, Luis Tanon-Reyes, Feng Cheng, Tongming Yin, and Ning Ye
Supramolecular Kandinsky Circles with High Antibacterial Activity, Heng Wang, Xiaomin Qian, Kun Wang, Ma Su, Wei-Wei Haoyang, Xin Jiang, Robert S. Brzozowski, Yiming Li, Prahathees J. Eswara, Jianfeng Cai, and Xiaopeng Li
How Many Differentially Expressed Genes: A Perspective from the Comparison of Genotypic and Phenotypic Distances, Bi Zhao, Aqeela Erwin, and Bin Xue
Decision-Tree Based Meta-Strategy Improved Accuracy of Disorder Prediction and Identified Novel Disordered Residues Inside Binding Motifs, Bi Zhao and Bin Xue
Submissions from 2017
Towards the Complete Proteinaceous Regulome of Acinetobacter Baumannii, Leila G. Casella, Andy Weiss, Ernesto Pérez-Rueda, J Antonio Ibarra, and Lindsey N. Shaw
A Family of Genus-specific RNAs in Tandem with DNA-binding Proteins Control Expression of the badA Major Virulence Factor Gene in Bartonella Henselae, Nhan Tu, Ronan K. Carroll, Andy Weiss, Lindsey N. Shaw, Gael Nicolas, Sarah Thomas, Amorce Lima, Udoka Okaro, and Burt Anderson
Submissions from 2016
Quantitative proteomic profiling reveals hepatic lipogenesis and liver X receptor activation in the PANDER transgenic model., Mark G. Athanason, Whitney A. Ratliff, Dale Chaput, Catherine B. MarElia, Melanie N. Kuehl, Stanley M. Stevens Jr., and Brant R. Burkhardt
The Exceptionally High Reactivity of Cys 621 is Critical for Electrophilic Activation of the Sensory Nerve Ion Channel TRPA1, Parmvir K. Bahia, Thomas A. Parks, Katherine R. Stanford, David A. Mitchell, Sameer Varma, Stanley M. Stevens Jr., and Thomas E. Taylor-Clark
Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc, Divya Balasubramanian, Elizabeth A Ohneck, Jessica Chapman, Andy Weiss, Min Kyung Kim, Tamara Reyes-Robles, Judy Zhong, Lindsey N. Shaw, Desmond S. Lun, Beatrix Ueberheide, Bo Shopsin, and Victor J Torres
Identification of Novel Cyclic Lipopeptides from a Positional Scanning Combinatorial Library with Enhanced Antibacterial and Antibiofilm Activities, Nina Bionda, Renee M. Fleeman, César de la Fuente-Núñez, Maria C. Rodriguez, Fany Reffuveille, Lindsey N. Shaw, Irena Pastar, Stephen C Davis, Robert E W Hancock, and Predrag Cudic
Transcriptomic Analysis of Staphylococcal SRNAs: Insights into Species-specific Adaption and the Evolution of Pathogenesis, William H. Broach, Andy Weiss, and Lindsey N. Shaw
Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling and Topology Prediction, Jérôme Bürgi, Bin Xue, Vladimir N Uversky, and F Gisou van der Goot
Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus, Ronan K. Carroll, Andy Weiss, William H. Broach, Richard E Wiemels, Austin B. Mogen, Kelly C. Rice, and Lindsey N. Shaw
Potential Role of PCTAIRE-2, PCTAIRE-3 and P-Histone H4 in Amyloid Precursor Protein-dependent Alzheimer Pathology, Dale Chaput, Lisa Kirouac, Stanley M. Stevens Jr., and Jaya Padmanabhan
Subcellular and in-vivo Nano-Endoscopy, Surya Venkatasekhar Cheemalapati, John Winskas, Hao Wang, Karthik Konnaiyan, Arseny Zhdanov, Alison Roth, Swamy Rakesh Adapa, Andrew Deonarine, Rays H. Y. Jiang, and Anna Pyayt
The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ32 and Lon protease, Miguel A. De la Cruz, Jason K. Morgan, Miguel A. Ares, Jorge A. Yáñez-Santos, James T. Riordan, and Jorge A. Girón
Measurement of Elastic Modulus of Collagen Type I Single Fiber, Pavel Dutov, Olga Antipova, Sameer Varma, Joseph P R O Orgel, and Jay D Schieber
MIR494 Reduces Renal Cancer Cell Survival Coinciding with Increased Lipid Droplets and Mitochondrial Changes, Punashi Dutta, Edward Haller, Arielle Sharp, and Meera Nanjundan
NEDDylation Promotes Stress Granule Assembly, Aravinth Kumar Jayabalan, Anthony Sanchez, Ra Young Park, Sang Pil Yoon, Gum-Yong Kang, Je-Hyun Baek, Paul Anderson, Younghoon Kee, and Takbum Ohn
Role of Deubiquitinating Enzymes in DNA Repair, Younghoon Kee and Tony T. Huang
Identification of Neuregulin-2 as a Novel Stress Granule Component, Jin Ah Kim, Aravinth K. Jayabalan, Vinoth K. Kothandan, Ramesh Mariappan, Younghoon Kee, and Takbum Ohn
Structural and Activity Characterization of Human PHPT1 after Oxidative Modification, Daniel R. Martin, Priyanka Dutta, Shikha Mahajan, Sameer Varma, and Stanley M. Stevens Jr.
Global Regulator of Virulence A (GrvA) Coordinates Expression of Discrete Pathogenic Mechanisms in Enterohemorrhagic Escherichia coli through Interactions with GadW-GadE, Jason K. Morgan, Ronan K. Carroll, Carly M. Harro, Khoury W Vendura, Lindsey N. Shaw, and James T. Riordan
The Heat Shock Transcription Factor HSF1 Induces Ovarian Cancer Epithelial-Mesenchymal Transition in a 3D Spheroid Growth Model., Chase D Powell, Trillitye R Paullin, Candice Aoisa, Christopher J Menzie, Ashley Ubaldini, and Sandy D. Westerheid
Using Student Writing and Lexical Analysis to Reveal Student Thinking about the Role of Stop Codons in the Central Dogma, Luanna B Prevost, Michelle K. Smith, and Jennifer K. Knight
Direct Analysis in Real Time (DART) of an Organothiophosphate at Ultrahigh Resolution by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry and Tandem Mass Spectrometry, Laszlo Prokai and Stanley M. Stevens Jr.
Effect of Hydroxychloroquine and Characterization of Autophagy in a Mouse Model of Endometriosis, A. Ruiz, S. Rockfield, N. Taran, E. Haller, Robert Engelman, I Flores, P Panina-Bordignon, and Meera Nanjundan
miR146a-Mediated Targeting of FANCM during Inflammation Compromises Genome Integrity, Devakumar Sundaravinayagam, Hye R. Kim, Ting T. Wu, Hyun H. Kim, Hyun-Seo Lee, Semo Jun, Jeong-Heon Cha, Younghoon Kee, Ho J. You, and Jung-Hee Lee
A Novel Rrm3 Function in Restricting DNA Replication via an Orc5-Binding Domain Is Genetically Separable from Rrm3 Function as an ATPase/Helicase in Facilitating Fork Progression, Salahuddin Syed, Claus Desler, Lene J Rasmussen, and Kristina H Schmidt
Molecular Typing and Virulence Analysis of Multidrug Resistant Klebsiella pneumoniae Clinical Isolates Recovered from Egyptian Hospitals, Reham Wasfi, Walid F. Elkhatib, and Hossam M. Ashour
Towards the Complete Small RNome of Acinetobacter Baumannii, Andy Weiss, William H. Broach, Mackenzie C. Lee, and Lindsey N. Shaw
The Skp1 Homologs SKR-1/2 Are Required for the Caenorhabditis elegans SKN-1 Antioxidant/Detoxification Response Independently of p38 MAPK., Cheng-Wei Wu, Andrew Deonarine, Aaron Przybysz, Kevin Strange, and Keith P. Chloe
Integrated Strategy Improves the Prediction Accuracy of miRNA in Large Dataset., Bin Xue, David Lipps, and Sree Devineni
Characterization of a SILAC Method for Proteomic Analysis of Primary Rat Microglia, Ping Zhang, Ashley E. Culver-Cochran, Stanley M. Stevens Jr., and Bin Liu
Self-Regulation of Functional Pathways by Motifs Inside the Disordered Tails of Beta-Catenin, Bi Zhao and Bin Xue
Submissions from 2015
Cellular Defects Caused by Hypomorphic Variants of the Bloom Syndrome Helicase Gene BLM, Vivek M. Shastri and Kristina H. Schmidt
Submissions from 2014
DBC1/CCAR2 and CCAR1 Are Largely Disordered Proteins that Have Evolved from One Common Ancestor, Jessica Brunquell, Jia Yuan, Aqeela Erwin, Sandy D. Westerheid, and Bin Xue
Inactivating UBE2M Impacts the DNA Damage Response and Genome Integrity Involving Multiple Cullin Ligases, Scott Cukras, Nicholas Morffy, Takbum Ohn, and Younghoon Kee
D-beta-Hydroxybutyrate Extends Lifespan in , Clare Edwards, John Canfield, Neil Copes, Muhammad Rehan, David Lipps, and Patrick C. Bradshaw
Relationship Between Gene Duplicability and Diversifiability in the Topology of Biochemical Networks, Zhanyong Guo, Wen Jiang, Nuno Lages, Wade Borcherds, and Degeng Wang
σ(N) -Dependent Control of Acid Resistance and the Locus of Enterocyte Effacement in Enterohemorrhagic Escherichia Coli is Activated by Acetyl Phosphate in a Manner Requiring Flagellar Regulator FlhDC and the σ(S) Antagonist FliZ, Avishek Mitra, Pamela A. Fay, Khoury W. Vendura, Zimrisha Alla, Ronan K. Carroll, Lindsey N. Shaw, and James T. Riordan
Evaluation of a Method for Nitrotyrosine Site Identification and Relative Quantitation Using a Stable Isotope-Labeled Nitrated Spike-In Standard and High Resolution Fourier Transform MS and MS/MS Analysis, Kent W. Seeley, Alison R. Fertig, Craig P. Dufresne, Joao P. C. Pinho, and Stanley M. Stevens Jr.
Submissions from 2013
Extracellular Proteases are Key Mediators of Staphylococcus Aureus Virulence via the Global Modulation of Virulence-determinant Stability, Stacey L. Kolar, J. Antonio Ibarra, Frances E. Rivera, Joe M. Mootz, Jessica E. Davenport, Stanley M. Stevens Jr., Alexander R. Horswill, and Lindsey N. Shaw
Submissions from 2012
Guide to Agave, Cinnamomum, Corymbia, Eucalyptus, Pandanus, and Sansevieria in the flora of Florida, Alan R. Franck
An IMS/ATP Assay for the Detection of Mycobacterium tuberculosis in Urine, Dawn M. Hunter and Daniel V. Lim
Submissions from 2010
Epistatic Relationships Between sarA and agr in Staphylococcus Aureus Biofilm Formation, Karen E. Beenken, Lara N. Mrak, Linda M. Griffin, Agnieszka K. Zielinska, Lindsey N. Shaw, Kelly C. Rice, Alexander R. Horswill, Kenneth W. Bayles, and Mark S. Smeltzer
Formation of Complex and Unstable Chromosomal Translocations in Yeast, Kristina H. Schmidt, Emilie Viebranz, Lillian Doerfler, Christina Lester, and Aaron Rubenstein
Submissions from 2008
Identification and Characterization of Sigma(S), a Novel Component of the Staphylococcus Aureus Stress and Virulence Responses, Lindsey N. Shaw, Catharina Lindholm, Tomasz K. Prajsnar, Halie K. Miller, Melanie C. Brown, Ewa Golonka, George C. Stewart, Andrej Tarkowski, and Jan Potempa
Factors Contributing to the Biofilm-Deficient Phenotype of Staphylococcus Aureus Sara Mutants, Laura H. Tsang, James E. Cassat, Lindsey N. Shaw, Karen E. Beenken, and Mark S. Smeltzer
Submissions from 2006
Suppression of Spontaneous Genome Rearrangements in Yeast DNA Helicase Mutants, Kristina H. Schmidt and Richard D. Kolodner
