Marine Science Faculty Publications

Hydrocarbons in Deep-Sea Sediments following the 2010 Deepwater Horizon Blowout in the Northeast Gulf of Mexico, Isabel C. Romero, Patrick Schwing, Gregg R Brooks, Rebekka A Larson, David W. Hastings, Greg Ellis, Ethan Goddard, and David Hollander

Novel Circular Single-stranded DNA Viruses Identified in Marine Invertebrates Reveal high Sequence Diversity and Consistent Predicted Intrinsic Disorder Patterns within Putative Structural Proteins, Karyna Rosario, Ryan Schenck, Rachel Harbeitner, Stephanie Lawler, and Mya Breitbart

Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds, Karyna Rosario, Yee Mey Seah, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane Polston, and Siobain Duffy

The Effect of Natural Organic Ligands on Trace Metal Speciation in San Francisco Bay: Implications for Water Quality Criteria, Sylvia Sander, Kristen N. Buck, and Mona Wells

Phytoplankton Blooms: New Initiative Using Marine Optics as a Basis for Monitoring Programs, E. Santamaría-del-Angel, I. Soto, R. Millán-Nuñez, A. González-Silvera, J. Wolny, S. Cerdeira-Estrada, R. Cajal-Medrano, Frank E. Muller-Karger, Jennifer Cannizzaro, Y. XS Padilla-Rosas, A. Mercado-Santana, F. F. Gracia-Escobar, P. Alvarez-Torres, and M. C. Ruiz-de-la-Torre

Mineral Oil Components Degradation Curves and Bacterial Growth Curves in Experiments Performed in High Pressure Reactors, Martina Schedler

YREE Scavenging in Seawater: A New Look at an Old Model, Johan Schijf, Emily A. Christenson, and Robert H. Byrne

Viscosity of Louisiana Sweet Crude Oil and North Sea Oil at one bar of pressure and various temperatures, Michael Schluter

Influence of the gas phase on jet rise velocity, water/air jets under ambient conditions, Michael Schlüter and Laqua Laqua

A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel Romero, Gregg R. Brooks, David Hastings, Rebekka A. Larson, and David Hollander

A Decline in Benthic Foraminifera following the Deepwater Horizon Event in the Northeastern Gulf of Mexico, Patrick Schwing, Isabel C. Romero, Gregg R Brooks, David W Hastings, Rebekka A Larson, and David Hollander

Environmental Physiology of the Jumbo Squid, Dosidicus gigas (d'Orbigny, 1835) (Cephalopoda: Ommastrephidae): Implications for Changing Climate, Brad A. Seibel

Autobiographical Sketches: Women in Oceanography: 10 Years Later, Amelia E. Shevenell

Southern Exposure: New Paleoclimate Insights From Southern Ocean and Antarctic Margin Sediments, Amelia E. Shevenell and Steven M. Bohaty

PAH Exposure in Gulf of Mexico Demersal Fishes, Post-Deepwater Horizon, Susan M. Snyder, Erin Pulster, Dana L Wetzel, and Steven A. Murawski

Evaluation and Optimization of Remote Sensing Techniques for Detection of Karenia Brevis Blooms on the West Florida Shelf, I. M. Soto, Jennifer Cannizzaro, Frank E. Muller-Karger, Chuanmin Hu, J. Wolny, and Dmitry Goldgof

Faunal Communities and Habitat Characteristics of the Big Bend Seagrass Meadows, 2009–2010., Christopher D. Stallings, Alejandra Mickle, James A. Nelson, Michael G. McManus, and Christopher C. Koenig

Effects of Preservation Methods of Muscle Tissue from Upper-trophic Level Reef Fishes on Stable Isotope Values (δ¹³C and δ¹⁵N), Christopher D. Stallings, James A. Nelson, Katherine L. Rozar, Charles S. Adams, Kara R. Wall, Theodore S. Switzer, Brent L. Winner, and David J. Hollander

Estimating Phycocyanin Pigment Concentration in Productive Inland Waters using Landsat Measurements: A Case Study in Lake Dianchi, Deyong Sun, Chuanmin Hu, Zhongfeng Qiu, and Kun Shi

Reconstruction of Hyperspectral Reflectance for Optically Complex Turbid Inland lakes: Test of a New Scheme and Implications for Inversion Algorithms, Deyong Sun, Chuanmin Hu, Zhongfeng Qiu, and Shengqiang Wang

Review of Wave-turbulence Interactions in the Stable Atmospheric Boundary Layer, Jielun Sun, Carmen J. Nappo, Larry Mahrt, Danijel Belušić, Branko Grisogono, David R. Stauffer, Manuel Pulido, Chantal Staquet, Qingfang Jiang, Annick Pouquet, Carlos Yagüe, Boris Galperin, Ronald B. Smith, John J. Finnigan, Shane D. Mayor, Gunilla Svensson, Andrey A. Grachev, and William D. Neff

Surface Oil Footprint and Trajectory of the Ixtoc-I Oil Spill Determined from Landsat/MSS and CZCS Observations, Shaojie Sun, Chuanmin Hu, and John W. Tunnell

Strategic Assessment of Fisheries Independent Monitoring Programs in the Gulf of Mexico, Paul Mark Suprenand, Michael Drexler, David L. Jones, and Cameron H. Ainsworth

Reduction of Nutrients, Microbes, and Personal Care Products in Domestic Wastewater by a Benchtop Electrocoagulation Unit, E. Symonds, M. Cook, S. McQuaig, R. Ulrich, R. Schenck, J. Lukasik, E. Van Vleet, and Mya Breitbart

Affordable Enteric Virus Detection Techniques Are Needed to Support Changing Paradigms in Water Quality Management, Erin M. Symonds and Mya Breitbart

Methodical Assessment of the Differences Between the QNSE and MYJ PBL Schemes for Stable Conditions, Esa-Matti Tastula, Boris Galperin, Jimy Dudhia, Margaret A. LeMone, Semion Sukoriansky, and Timo Vihma

The Importance of Surface Layer Parameterization in Modeling of Stable Atmospheric Boundary Layers, Esa-Matti Tastula, Boris Galperin, Semion Sukoriansky, Ashok Luhar, and Phil Anderson

The GEOTRACES Intermediate Data Product 2014, The GEOTRACES Group and Tim M. Conway

Radiocarbon Dating and Calibration, Torbjörn E. Törnqvist, Brad E. Rosenheim, Ping Hu, and Alvaro B. Fernandez

Whither the U.S. National Ocean Policy Implementation Plan?, H. Torres, Frank E. Muller-Karger, D. Keys, H. Thornton, Mark E. Luther, and K. Alsharif

An Ethogram of the Humboldt Squid Dosidicus gigas Orbigny (1835) as Observed from Remotely Operated Vehicles, Lloyd A. Trueblood, Sarah Zylinski, Bruce H. Robison, and Brad A. Seibel

Community Metabolism in Shallow Coral Reef and Seagrass Ecosystems, Lower Florida Keys, D. Turk, K. K. Yates, M. Vega-Rodriguez, G. Toro-Farmer, C. L'Esperance, N. Melo, D. Ramsewak, M. Dowd, S. C. Estrada, Frank E. Muller-Karger, S. R. Herwitz, and W. R. McGillis

Non-lethal Approach Identifies Variability of δ¹⁵N Values in the Fin Rays of Atlantic Goliath Grouper, Epinephelus itajara, Orian E. Tzadik, Ethan A. Goddard, David J. Hollander, Christopher C. Koenig, and Christopher D. Stallings

Biochemical characterization of Extracellular Polymeric Substances produced by phytoplankton-associated bacteria, Justine van Eenennaam

The Effects of Geomorphic Changes during Hurricane Sandy on Water Levels in Great South Bay, Maarten van Ormondt, Cheryl Hapke, Dano Roelvink, and Tim Nelson

Influence of Water-Temperature Variability on Stony Coral Diversity in Florida Keys Patch Reefs, M. Vega-Rodriguez, Frank E. Muller-Karger, P. Hallock, G. A. Quiles-Perez, C. M. Eakin, M. Colella, D. L. Jones, J. Li, I. Soto, L. Guild, S. Lynds, and R. Ruzicka

Evidence for Multidecadal Variability in US Extreme Sea Level Records, Thomas Wahl and Don P. Chambers

Increasing risk of Compound Flooding from Storm Surge and Rainfall for Major US Cities, Thomas Wahl, Shaleen Jain, Jens Bender, Steven D. Meyers, and Mark E. Luther

A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, J. J. Walsh, J. M. Lenes, B. P. Darrow, A. A. Parks, Robert H. Weisberg, Lianyuan Zheng, C. Hu, B. B. Barnes, Kendra L. Daly, and S. I. Shin

A Simulation Analysis of the Plankton Fate of the Deepwater Horizon Oil Spills, John J. Walsh, Jason M. Lenes, Brian P. Darrow, Ashley A. Parks, Robert H. Weisberg, Lianyuan Zheng, and Chuanmin Hu

Extracting Oil Slick Features From VIIRS Nighttime Imagery Using a Gaussian Filter and Morphological Constraints, Mengqiu Wang and Chuanmin Hu

Ocean Acidification along the Gulf Coast and East Coast of the USA, Rik Wanninkhof, Leticia Barbero, Robert Byrne, Wei-Jun Cai, Wei-Jen Huang, Jia-Zhong Zhang, Molly Baringer, and Chris Langdon

Basic Tenets for Coastal Ocean Ecosystems Monitoring, Robert H. Weisberg, Lianyuan Zheng, and Yonggang Liu

What Happens to Soil Organic Carbon as Coastal Marsh Ecosystems Change in Response to Increasing Salinity? An Exploration using Ramped Pyrolysis, Elizabeth K. Williams and Brad E. Rosenheim

Quantification of Refractory Organic Material in Amazon Mudbanks of the French Guiana Coast, Elizabeth K. Williams, Brad E. Rosenheim, Mead Allison, Ann P. McNichol, and Li Xu

Quantifying Anthropogenic Carbon Inventory Changes in the Pacific Sector of the Southern Ocean, Nancy L. Williams, Richard A. Feely, Christopher L. Sabine, Andrew G. Dickson, James H. Swift, Lynne D. Talley, and Joellen L. Russell

Application of Bayesian Networks to Hindcast Barrier Island Morphodynamics, Kathleen E. Wilson, Peter N. Adams, Cheryl J. Hapke, Erika E. Lentz, and Owen Brenner

Potential Habitat of Acropora spp. on Reefs of Florida, Puerto Rico, and the US Virgin Islands, Katherine Wirt

World’s Largest Macroalgal Blooms Altered Phytoplankton Biomass in Summer in the Yellow Sea: Satellite Observations, Qianguo Xing, Chuanmin Hu, Danling Tang, Liqiao Tian, Shilin Tang, Xiao Hua Wang, Mingjing Lou, and Xuelu Gao

Contributions of Organic Alkalinity to Total Alkalinity in Coastal Waters: A Spectrophotometric Approach, Bo Yang, Robert H. Byrne, and Michael Lindemuth

Subannual Variability of Total Alkalinity Distributions in the Northeastern Gulf of Mexico, Bo Yang, Robert H. Byrne, and Rik Wanninkhof

Atmospheric Correction of Aisa Measurements Over the Florida Keys Optically Shallow Waters: Challenges in Radiometric Calibration and Aerosol Selection, Mingrui Zhang, Chuamin Hu, D. English, P. Carlson, Frank E. Muller-Karger, G. Toro-Farmer, and S. R. Herwitz

Influences of Channel Deepening and Widening on the Tidal and Nontidal Circulations of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

On the Flushing of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Shuzong Han

On the Salt Balance of Tampa Bay, Jun Zhu, Robert H. Weisberg, Lianyuan Zheng, and Hongshuai Qi

Submissions from 2014 2014

Productivity and Linkages of the Food Web of the Southern Region of the Western Antarctic Peninsula Continental Shelf, Tosca Ballerini, Eileen E. Hofmann, David G. Ainley, Kendra L. Daly, Marina Marrari, Christine A. Ribic, Walker O. Smith Jr., and John H. Steele

Development of the Coastal Storm Modeling System (CoSMoS) for Predicting the Impact of Storms on High-energy, Active-margin Coasts, Patrick L. Barnard, Maarten van Ormondt, Li H. Erikson, Jodi Eshleman, Cheryl Hapke, Peter Ruggiero, Peter N. Adams, and Amy C. Foxgrover

Use of Landsat Data to Track Historical Water Quality Changes in Florida Keys Marine Environments, Brian B. Barnes, Chuanmin Hu, Kara L. Holekamp, Slawomir Blonski, Bruce A. Spiering, David Palandro, and Brian Lapointe

Estimation of Diffuse Attenuation of Ultraviolet Light in Optically Shallow Florida Keys Waters from Modis Measurements, Brian Burnel Barnes, Chuanmin Hu, Jennifer P. Cannizzaro, Susanne E. Craig, David L. Jones, John C. Lehrter, Nelson Melo, Blake A. Schaeffer, and Richard Zepp

A Time-Series View of Changing Surface Ocean Chemistry Due to Ocean Uptake of Anthropogenic Co2 and Ocean Acidification, Nicholas R. Bates, Yrene M. Astor, Matthew J. Church, Kim Currie, John E. Dore, Melchor González-Dávila, Laura Lorenzoni, Frank E. Muller-Karger, Jon Olafsson, and J. Magdalena Santana-Casiano

Florida Gulf Bay Scallop (Argopecten Irradians Concentricus) Population Genetic Structure: Form, Variation, and Influential Factors, Theresa M. Bert, William S. Arnold, Ami E. Wilbur, Seifu Seyoum, Anne L. McMillen-Jackson, Sarah P. Stephenson, Robert H. Weisberg, and Laura A. Yarbro

Site Fidelity and Condition Metrics Suggest Sequential Habitat Use by Juvenile Common Snook, Adam B. Brame, Carole C. McIvor, Ernst B. Peebles, and David J. Hollander

Linking Rainforest Ecophysiology and Microclimate through Fusion of Airborne LiDAR and Hyperspectral Imagery, Eben N. Broadbent, Angélica M. Zambrano, Gregory P. Asner, Christopher B. Field, Brad E. Rosenheim, Ty Kennedy-Bowdoin, David E. Knapp, David Burke, Christian Giardina, and Susan Cordell

Distinct Pools of Dissolved Iron‐binding Ligands in the Surface and Benthic Boundary Layer of the California Current, Randelle Bundy, Dondra Biller, Kristen N. Buck, Kenneth Bruland, and Katherine Barbeau

Disparity Between Planktonic Fish Egg and Larval Communities as Indicated by DNA Barcoding, Scott Burghart, Lauren Van Woudenberg, Camille Daniels, Steven Meyers, Ernst Peebles, and Mya Breitbart

Inorganic Speciation of Dissolved Elements in Seawater: the Influence of pH on Concentration Ratios, Robert H. Byrne

Measuring Ocean Acidification: New Technology for a New Era of Ocean Chemistry, Robert H. Byrne

On the Ability of Global Sea Level Reconstructions to Determine Trends and Variability, F. M. Calafat, D. P. Chambers, and M. N. Tsimplis

Cold Seeps Associated with a Submarine Debris Avalanche Deposit at Kick’em Jenny Volcano, Grenada (Lesser Antilles), Steven Carey, Robert Ballard, Katherine L.C. Bell, Richard J. Bell, Patrick Connally, Frederic Dondin, Sarah Fuller, Judith Gobin, Patricia Miloslavich, Brennan Phillips, Chris Roman, Brad Seibel, Nam Siu, and Clara Smart

Fluid/Gas Venting and Biological Communities at Kick’em Jenny Submarine Volcano, Grenada (West Indies), Steven Carey, Katherine L.C. Bell, Robert D. Ballard, Christopher Roman, Frederic Dondin, Patricia Miloslavich, Judith Gobin, Brad Seibel, Richard Bell, Clara Smart, Sarah A. Fuller, Nam Siu, Patrick Connally, Ruth Blake, Karen Wishner, and Brennan T. Phillips

Eucalanoid Copepod Metabolic Rates in the Oxygen Minimum Zone of the Eastern Tropical North Pacific: Effects of Oxygen and Temperature, Christine J. Cass and Kendra L. Daly

Assessment of Storage Lipid Accumulation Patterns in Eucalanoid Copepods from the Eastern Tropical Pacific Ocean, Christine J. Cass, Kendra L. Daly, and Stuart G. Wakeham

Water Cycle: Ocean’s Role, Don P. Chambers

Using Natural Abundance Radiocarbon To Trace the Flux of Petrocarbon to the Seafloor Following the Deepwater Horizon Oil Spill, Jeffrey Chanton, Tingting Zhao, Brad E. Rosenheim, Samantha H. Bosman, Charlotte Brunner, Kevin M. Yeager, Arne R. Dierks, and David J. Hollander

In Search of Oil Seeps in the Cariaco Basin Using MODIS and MERIS Medium-Resolution Data, Shuangling Chen and Chuanmin Hu

Quantification of Dissolved Iron Sources to the North Atlantic Ocean, Tim M. Conway and Seth G. John

The Biogeochemical Cycling of Zinc and Zinc Isotopes in the North Atlantic Ocean, Tim M. Conway and Seth G. John

Problems Associated with a Lipofuscin Extraction Method Used to Age Blue Crabs Callinectes sapidus Cultured in Florida, USA, Claire E. Crowley, Ryan L. Gandy, Kendra L. Daly, and Edward S. Van Vleet

Women in Oceanography: Autobiographical Sketches, Kendra L. Daly

Mean Sea Level Variability in the North Sea: Processes and Implications, Sönke Dangendorf, Francisco M. Calafat, Arne Arns, Thomas Wahl, Ivan D. Haigh, and Jürgen Jensen

North Sea Storminess from a Novel Storm Surge Record since AD 1843, Sönke Dangendorf, Sylvin Müller-Navarra, Jürgen Jensen, Frederik Schenk, Thomas Wahl, and Ralf Weisse

A New Bathymetric Compilation for the South Orkney Islands Region, Antarctic Peninsula (49°–39°W to 64°–59°S): Insights into the Glacial Development of the Continental Shelf, William A. Dickens, Alastair G. C. Graham, James A. Smith, Julian A. Dowdeswell, Robert D. Larter, Claus-Dieter Hillenbrand, Phil N. Trathan, Jan Erik Arndt, and Gerhard Kuhn

The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota, Larry J. Dishaw, Jaime Flores-Torres, Simon Lax, Kristina Gemayel, Brittany Leigh, Daniela Melillo, M. Gail Mueller, Lenina Natale, Ivana Zucchetti, Rosaria De Santis, Maria Rosaria Pinto, Gary W. Litman, and Jack W. Gilbert

Biological Assessment of Eastern Oysters (Crassostrea virginica) Inhabiting Reef, Mangrove, Seawall, and Restoration Substrates, Michael Drexler, Melanie L. Parker, Stephen P. Geiger, William S. Arnold, and Pamela Hallock

Initial Results of Ship Detection and Tracking Using Wera Hf Ocean Radar with Mimo Configuration, A. Dzvonkovskaya, T. Helzel, L. Peterson, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg

Initial Surface Current Measurements on the West Florida Shelf Using Wera Hf Ocean Radar with Multiple Input Multiple Output (MIMO) Synthetic Aperture, Anna Dzvonkovskaya, Clifford R. Merz, Yonggang Liu, Robert H. Weisberg, Thomas Helzel, and Leif Peterson

Dramatic Inundation Changes of China’s Two Largest Freshwater Lakes: Natural Process or Influenced by the Three Gorges Dam? A Revisit, Lian Feng, Chuanmin Hu, and Xiaoling Chen

Influence of the Three Gorges Dam on Total Suspended Matters in the Yangtze Estuary and Its Adjacent Coastal Waters: Observations from MODIS, Lian Feng, Chuanmin Hu, Xiaoling Chen, and Qingjun Song

Blank Corrections for Ramped Pyrolysis Radiocarbon Dating of Sedimentary and Soil Organic Carbon, Alvaro Fernandez, Guaciara M. Santos, Elizabeth K. Williams, Matthew A. Pendergraft, Lael Vetter, and Brad E. Rosenheim

Siderite ‘clumped’ Isotope Thermometry: A New Paleoclimate Proxy for Humid Continental Environments, Alvaro Fernandez, Jianwu Tang, and Brad E. Rosenheim

The Impact of Changing Surface Ocean Conditions on the Dissolution of Aerosol Iron, Matthew Fishwick, Peter Sedwick, Maeve Lohan, Pau Worsfold, Kristen N. Buck, Thomas Church, and Simon Ussher

Large-scale Submarine Landslides, Channel and Gully Systems on the Southern Weddell Sea Margin, Antarctica, J. A. Gales, P. T. Leat, R. D. Larter, G. Kuhn, C.-D. Hillenbrand, A. G. C. Graham, N. C. Mitchell, A. J. Tate, G. B. Buys, and W. Jokat

Anisotropic Turbulence and Rossby Waves in an Easterly Jet: An Experimental Study, Boris Galperin, Jesse Hoemann, Stefania Espa, and Gabriella Di Nitto

Cassini Observations Reveal a Regime of Zonostrophic Macroturbulence on Jupiter, Boris Galperin, Roland M.B. Young, Semion Sukoriansky, Nadejda Dikovskaya, Peter L. Read, Andrew J. Lancaster, and David Armstrong

Real-Time Quality Control of Current Velocity Data on Individual Grid Cells in Wera Hf Radar, Roberto Gomez, Thomas Helzel, Leif Peterson, Matthias Kniephoff, Clifford R. Merz, Yonggang Liu, and Robert H. Weisberg