This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

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Submissions from 2004

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Global Distribution of Nearly Identical Phage-encoded DNA Sequences, Mya Breitbart, Jon Miyake, and Forest Rohwer

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Phage Community Dynamics in Hot Springs, Mya Breitbart, Linda Wegley, Steven Leeds, Tom Schoenfeld, and Forest Rohwer

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In-Situ Measurements of Cu in an Estuarine Environment Using a Portable Spectrophotometric Analysis System, Michael R. Callahan, Eric A. Kaltenbacher, and Robert H. Byrne

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Widespread Association of a Rickettsiales‐like Bacterium with Reef‐building Corals, Veronica Casas, David Kline, Linda Wegley, Yanan Yu, Mya Breitbart, and Forest Rohwer

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Preliminary Observations of Global Ocean Mass Variations with GRACE, D. Chambers, J. Wahr, and R Steven Nerem

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Glass Cplume‐ridge Interaction, and Hydrous Melting along the Galápagos Spreading Center, 90.5°W to 98°W, Buffy Cushman, John Sinton, Garrett Ito, and Jacqueline Eaby Dixon

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Overwintering Growth and Development of Larval Euphausia superba: An Interannual Comparison under Varying Environmental Conditions West of the Antarctic Peninsula, Kendra L. Daly

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Chemical and Biological Sensors for Time-Series Research: Current Status and New Directions, Kendra L. Daly, Robert H. Byrne, Andrew G. Dickson, Scott M. Gallager, Mary J. Perry, and Margaret K. Tivey

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Comparisons of Morphology and Neritic Distributions of Euphausia Crystallorophias and Euphausia Superba Furcilia during Autumn and Winter West of the Antarctic Peninsula, Kendra L. Daly and Jason J. Zimmerman

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Lateral Variation in Upper Mantle Viscosity: Role of Water, Jacqueline E. Dixon, Timothy H. Dixon, D. R. Bell, and Rocco Malservisi

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Annual Cycles of Gonadal Development of Six Common Gorgonians from Biscayne National Park, Florida, Usa, K. Fitzsimmons-Sosa, Pamela Hallock, J. Wheaton, K. E. Hackett, and Michael K. Callahan

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Mudflats and Mud Suspension Observed from Satellite Data in French Guiana, J. M. Froidefond, F. Lahet, C Hu, D. Doxaran, D. Guiral, M. T. Prost, and J.-F. Ternon

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The Ubiquitous Zonal Jets in the Atmospheres of Giant Planets and Earth's Oceans, Boris Galperin, Hideyuki Nakano, Huei-Ping Huang, and Semion Sukoriansky

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The Role and the Determination of Residence Proportions for Fisheries Resources Across Political Boundaries: the Georges Bank Example, Stratis Gavaris and Steven Murawski

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Evidence for Dissolved Organic Nitrogen and Phosphorus Uptake During a Cyanobacterial Bloom in Florida Bay, P. M. Glibert, Cynthia A. Heil, David J. Hollander, M. Revilla, A. Hoare, J. Alexander, and S. Murasko

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Generation, Transport, and Preservation of the Alkenone-Based U37K' Sea Surface Temperature Index in the Water Column and Sediments of the Cariaco Basin (Venezuela), Miguel A. Goni, Mark P. Woodworth, Heather L. Aceves, Robert C. Thunell, Eric Tappa, David Black, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela

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Biogeographical Regions of the Tropical and Subtropical Atlantic Ocean Off South America: Classification Based on Pigment (Czcs) and Chlorophyll-A (Seawifs) Variability, A. Gonzalez-Silvera, E. Santamaria-Del-Angel, V. M. Garcia, C. A. Garcia, R. Millán-Nuñez, and Frank E. Muller-Karger

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Evolution and Function of Coral Reef Ecosystems, Pamela Hallock

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Coral-Reef Risk Assessment from Satellites to Molecules: A Multi-Scale Approach to Environmental Monitoring and Risk Assessment of Coral Reefs, Pamela Hallock, Kwasi H. Barnes, and Elizabeth M. Fisher

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The Measurement and Interpretation of Coastal Cliff and Bluff Retreat, Cheryl J. Hapke

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Map Showing Estimated Sediment Yield from Coastal Landslides and Active Slope Distribution Along the Big Sur Coast, Monterey and San Luis Obispo Counties, California, Cheryl J. Hapke, Krystal R. Green, and Kate Dallas

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Comments on “An Improved Model for the Turbulent PBL”, S. Hassid and B. Galperin

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Coastal Ocean Wind Fields Gauged against the Performance of an Ocean Circulation Model, Ruoying He, Yonggang Liu, and Robert H. Weisberg

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Tectonic/volcanic Segmentation and Controls on Hydrothermal Venting Along Earth's Fastest Seafloor Spreading System, EPR 27°–32°S, Richard Hey, Edward Baker, DelWayne Bohnenstiehl, Gary Massoth, Martin Kleinrock, Fernando Martinez, David Naar, Debra Pardee, John Lupton, Richard Feely, Jim Gharib, Joe Resing, Cristian Rodrigo, Francis Sansone, and Sharon Walker

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Vertical and Temporal Variability of Redox Zonation in the Water Column of the Cariaco Basin: Implications for Organic Carbon Oxidation Pathways, T. Y. Ho, G. T. Taylor, Y. Astor, R. Varela, Frank E. Muller-Karger, and M. Scranton

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Assessment of Estuarine Water-Quality Indicators Using Modis Medium-Resolution Bands: Initial Results from Tampa Bay, Fl, C. Hu, Z. Chen, T. D. Clayton, P. Swarzenski, J. C. Brock, and Frank E. Muller-Karger

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The Dispersal of the Amazon and Orinoco River Water in the Tropical Atlantic and Caribbean Sea: Observation from Space and S-Palace Floats, C. Hu, E. T. Montgomery, R. W. Schmitt, and Frank E. Muller-Karger

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Linkages between Coastal Runoff and the Florida Keys Ecosystem: a Study of a Dark Plume Event, C. Hu, Frank E. Muller-Karger, G. A. Vargo, M. B. Neely, and E. Johns

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Variability of Bio-Optical Properties at Sampling Stations and Implications for Remote Sensing: a Case Study in the North-East Gulf of Mexico, C. Hu, B. Nababan, D. C. Biggs, and Frank E. Muller-Karger

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Current and Thermal Variations to Westerly Wind Bursts in the Equatorial Pacific Ocean, Ying Jang Yang, Tswen Yung Tang, and Robert H. Weisberg

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Understanding the Trophic Role of the Antarctic Ctenophore, Callianira antarctica, using Lipid Biomarkers, Se-Jong Ju, Kerri M. Scolardi, Kendra L. Daly, and H. R. Harvey

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Field-deployed Underwater Mass Spectrometers for Investigations of Transient Chemical Systems, Gottfried P.G. Kibelka, R. Timothy Short, Strawn K. Toler, John E. Edkins, and Robert H. Byrne

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El Nino Southern Oscillation-Related Salinity Variations Recorded in the Skeletal Geochemistry of a Porites Coral from Espiritu Santo, Vanuatu, K. H. Kilbourne, Terrence M. Quinn, Frederick W. Taylor, Thierry Delcroix, and Yves Gouriou

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A Fossil Coral Perspective on Western Tropical Pacific Climate Similar to 350 Ka, K. H. Kilbourne, Terrence M. Quinn, and F. W. Taylor

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Carbonate Complexation of Yttrium and the Rare Earth Elements in Natural Waters, Yu-Ran Luo and Robert H. Byrne

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Blooms of σ0 in the TOPEX Radar Altimeter Data, Gary T. Mitchum, David W. Hancock III, George S. Hayne, and Douglas C. Vandemark

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Processes of Coastal Upwelling and Carbon Flux in the Cariaco Basin, Frank E. Muller-Karger, R. Varela, R. Thunell, Y. Astor, Mingrui Zhang, R. Luerssen, and C. Hu

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Vigorous Venting and Biology at Pito Seamount, Easter Microplate, D. F. Naar, R. Hekinian, M. Segonzac, J. Francheteau, R. Armijo, J. -P. Cogne, M. Constantin, J. Girardeau, R. N. Hey, and R. C. Searle

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Florida's Black Water Event, Merrie Beth Neely, Erich Bartels, Jennifer Cannizzaro, Kendall L. Carder, Paula Coble, David English, Cynthia Heil, Chuanmin Hu, John Hunt, Jim Ivey, Gil McRae, Erich Mueller, Ernst Peebles, and Karen Steidinger

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Synoptic Water Clarity Assessment in the Florida Keys Using Diffuse Attenuation Coefficient Estimated from Landsat Imagery, D. Palandro, C. Hu, S. Andréfouët, and Frank E. Muller-Karger

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Opening the Lost Valley: Implementing a “Back to the Future” Restoration Policy for Marine Ecosystems for Their Fisheries, Tony J. Pitcher, Johanna J. (Sheila) Heymans, Cameron Ainsworth, Eny A. Buchary, Ussif Rashid Sumaila, and Villy Christensen

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Atmospheric Concentrations and Dry Deposition Rates of Polycyclic Aromatic Hydrocarbons (PAHs) for Tampa Bay, Florida, USA, Noreen Poor, Raphael Tremblay, Venkat R. Bhethanabotla, Erick Swartz, Mark E. Luther, and Scott Campbell

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Chemical Speciation of Hg(ii) with Environmental Inorganic Ligands, Kipton J. Powell, Paul L. Brown, Robert H. Byrne, Tamas Gajda, Glenn Hefter, Staffan Sjöberg, and Hans Wanner

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Comparative Scavenging of Yttrium and the Rare Earth Elements in Seawater: Competitive Influences of Solution and Surface Chemistry, Kelly A. Quinn, Robert H. Byrne, and Johan Schijf

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Stability of North Atlantic Water Masses in Face of Pronounced Climate Variability During the Pleistocene, M. E. Raymo, D. W. Oppo, Benjamin P. Flower, D. A. Hodell, J. F. McManus, K. A. Venz, K. F. Kleiven, and K. McIntyre

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On the Seasonal Correlation of Surface Particle Fields with Wind Stress and Mississippi Discharge in the Northern Gulf of Mexico, J. E. Salisbury, J. W. Campbell, E. Linder, L. David Meeker, Frank E. Muller-Karger, and C. Vörösmarty

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Determination of SO4β1 for Yttrium and the Rare Earth Elements at I = 0.66 M and T = 25°C—implications for YREE Solution Speciation in Sulfate-rich Waters, Johan Schijf and Robert H. Byrne

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Ammonium Content and Buoyancy in Midwater Cephalopods, Brad A. Seibel, Shana K. Goffredi, Erik V. Thuesen, James J. Childress, and Bruce H. Robison

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Paleoceanographic Change During the Middle Miocene Climate Revolution: An Antarctic Stable Isotope Perspective, Amelia E. Shevenell and James P. Kennett

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Middle Miocene Southern Ocean Cooling and Antarctic Cryosphere Expansion, Amelia E. Shevenell, James P. Kennett, and David W. Lea

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Moving Beyond ’Intelligent Tinkering’: Advancing an Ecosystem Approach to Fisheries, Michael Sissenwine and Steven Murawski

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Radionuclide Fluxes and Particle Scavenging in Cariaco Basin, J. M. Smoak, C. Benitez-Nelson, W. S. Moore, R. C. Thunell, Y. Astor, and Frank E. Muller-Karger

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Monthly Variation of Pigment Concentrations and Seasonal Winds in China'S Marginal Seas, D. L. Tang, I. H. Ni, Frank E. Muller-Karger, and I. S. Oh

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Nitrogen Isotope Dynamics of the Cariaco Basin, Venezuela, Robert C. Thunell, Daniel M. Sigman, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela

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Decadal Shifts in Biophysical Forcing of Arctic Marine Food Webs: Numerical Consequences, John J. Walsh, Dwight A. Dieterle, Wieslaw Maslowski, and Terry E. Whitledge

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Phytoplankton Community Structure and Productivity Along the Axis of the Mississippi River Plume in Oligotrophic Gulf of Mexico Waters, Boris Wawrik and John H. Paul

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High Rates of Ammonium Recycling Drive Phytoplankton Productivity in the Offshore Mississippi River Plume, Boris Wawrik, John H. Paul, Deborah A. Bronk, David John, and Mike Gray

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Coral-associated Archaea, Linda Wegley, Yanan Yu, Mya Breitbart, Veronica Casas, David Kline, and Forest Rohwer

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Coastal Ocean Circulation Influences on Remotely Sensed Optical Properties: a West Florida Shelf Case Study, Robert H. Weisberg, Ruoying He, Gary J. Kirkpatrick, Frank E. Muller-Karger, and John J. Walsh

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Environmental Chemical Mapping Using an Underwater Mass Spectrometer, P. G. Wenner, R. J. Bell, F. H.W. van Amerom, S. K. Toler, J. E. Edkins, M. L. Hall, K Koehn, R. T. Short, and R. H. Byrne

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Bleaching in Amphistegina gibbosa D'Orbigny (Class Foraminifera): Observations from Laboratory Experiments Using Visible and Ultraviolet Light, Dana E. Williams and Pamela Hallock

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Nutrient Stimulation of Lytic Phage Production in Bacterial Populations of the Gulf of Mexico, S. J. Williamson and John H. Paul

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Oceanographic Controls on the Carbon Isotopic Compositions of Sinking Particles from the Cariaco Basin, M. Woodworth, M. Goñi, E. Tappa, K. Tedesco, R. Thunell, Y. Astor, R. Varela, J. Rafael Diaz-Ramos, and Frank E. Muller-Karger

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Tide, Bouyancy, and Wind-Driven Circulation of the Charlotte Harbor Estuary: A Model Study, Lianyuan Zheng and Robert H. Weisberg

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Tide, Buoyancy, and Wind-Driven Circulation of the Charlotte Harbor Estuary: A Model Study, Lianyuan Zheng and Robert H. Weisberg

Submissions from 2003

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A Top–Down, Multidisciplinary Study of the Structure and Function of the Pack-Ice Ecosystem in the Eastern Ross Sea, Antarctica, S. F. Ackley, J. L. Bengtson, P. Boveng, M. Castellini, Kendra L. Daly, S. Jacobs, G. L. Kooyman, J. Laake, L. Quetin, and R. Ross

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Multi-Scale Remote Sensing of Microbial Mats in an Atoll Environment, S. Andréfouët, E. J. Hochberg, C. Payri, M. J. Atkinson, Frank E. Muller-Karger, and H. Ripley

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Multi-Site Evaluation of Ikonos Data for Classification of Tropical Coral Reef Environments, S. Andréfouët, P. Kramer, D. Torres-Pulliza, K. E. Joyce, E. J. Hochberg, R. Garza-Pérez, P. J. Mumby, B. Riegl, H. Yamano, W.H. H. White, M. Zubia, J. Brock, S. R. Phinn, A. Naseer, and B. G. Hatcher

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Influence of the Spatial Resolution of Seawifs, Landsat-7, Spot, and International Space Station Data on Estimates of Landscape Parameters of Pacific Ocean Atolls, S. Andréfouët, J. A. Robinson, C. Hu, G. C. Feldman, B. Salvat, C. Payri, and Frank E. Muller-Karger

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Seasonal and Interannual Variation in the Hydrography of the Cariaco Basin: Implications for Basin Ventilation, Y. Astor, Frank E. Muller-Karger, and M. I. Scranton

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Deep-sea Field Experiments on the Biological Impacts of Direct Deepsea CO2 Injection, J. P. Barry, B. A. Seibel, J. C. Drazen, M. N. Tamburri, K. R. Buck, C. Lovera, L. Kuhnz, E. T. Peltzer, K. Osborn, P. J. Whaling, P. Walz, and P. G. Brewer

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Metagenomic Analyses of an Uncultured Viral Community from Human Feces, Mya Breitbart, Ian Hewson, Ben Felts, Joseph Mahaffy, James Nulton, Peter Salamon, and Forest Rohwer

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Comment on “solubility of Platinum in Aqueous Solutions at 25°c and Phs 4 to 10 under Oxidizing Conditions” by Mohamed Azaroual, Bruno Romand, Philippe Freyssinet, and Jean-Robert Disnar, Robert H. Byrne

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Calibration and Verification of Jason-1 Using Global Along-Track Residuals with TOPEX Special Issue: Jason-1 Calibration/Validation, Don Chambers, J. C. Ries, and T. J. Urban

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New TOPEX Sea State Bias Models and Their Effect on Global Mean Sea Level, D. P. Chambers, S. A. Hayes, J. C. Ries, and T. J. Urban

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Submarine Strombolian Eruptions on the Gorda Mid‐Ocean Ridge, David A. Clague, Alicé S. Davis, and Jacqueline E. Dixon

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Comparative Geochemistries of PdII and PtII:: Formation of Mixed Hydroxychloro and Chlorocarbonato-complexes in Seawater, Jeanette M. Cosden and Robert H. Byrne

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Fractionation of Platinum Group Elements in Aqueous Systems:  Comparative Kinetics of Palladium and Platinum Removal from Seawater by Ulva Lactuca L., Jeanette M. Cosden, Johan Schijf, and Robert H. Byrne

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Ocean Observer Study: A Proposed National Asset to Augment the Future U. S. Operational Satellite System, John D. Cunningham, Don P. Chambers, Curtiss O. Davis, Andrew Gerber, Rosalind Hetz, James P. McGuire, and William Pichel

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Phytoplankton Assemblage Structure and Primary Productivity Along 170° W in the South Pacific Ocean, Giacomo R. DiTullio, Mark E. Geesey, David R. Jones, Kendra L. Daly, Lisa Campbell, and Walker O. Smith

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Biogenic Fluxes in the Cariaco Basin: a Combined Study of Sinking Particulates and Underlying Sediments, M. A. Goñi, H. L. Aceves, R. C. Thunell, E. Tappa, D. Black, Y. Astor, R. Varela, and Frank E. Muller-Karger

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A Synthetic Float Analysis of Upper-Limb Meridional Overturning Circulation Interior Ocean Pathways in the Tropical/Subtropical Atlantic, G. R. Halliwell Jr., Robert H. Weisberg, and D. A. Mayer

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Foraminifera as Bioindicators in Coral Reef Assessment and Monitoring: the Foram Index, Pamela Hallock, Barbara H. Lidz, Elizabeth Cockey-Burkhard, and Kelly B. Donnelly

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Foraminifera as Bioindicators in Coral Reef Assessment and Monitoring: The Foram Index, Pamela Hallock, Barbara H. Lidz, Elizabeth M. Cockey-Burkhard, and Kelly B. Donnelly

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Quantifying Sediment Yield from Coastal Landslides Using Digital Photogrammetry and GIS: Big Sur, California, Cheryl J. Hapke

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Sediment-Starved Sand Ridges on a Mixed Carbonate/Siliciclastic Inner Shelf off West-central Florida, S. E. Harrison, S. D. Locker, A. C. Hine, J. H. Edwards, D. F. Naar, D. C. Twichell, and D. J. Mallinson

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A Loop Current Intrusion Case Study on the West Florida Shelf, Ruoying He and Robert H. Weisberg

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West Florida Shelf Circulation and Temperature Budget for the 1998 Fall Transition, Ruoying He and Robert H. Weisberg

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A Cloud-Free, Satellite-Derived, Sea Surface Temperature Analysis for the West Florida Shelf, Ruoying He, Robert H. Weisberg, Haiying Zhang, Frank E. Muller-Karger, and Robert W. Helber

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Interannual Volume Variability in the Tropical Pacific, Christina L. Holland and Gary T. Mitchum

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The 2002 Ocean Color Anomaly in the Florida Bight: a Cause of Local Coral Reef Decline?, C. Hu, K. E. Hackett, M. K. Callahan, S. Andréfouët, J. L. Wheaton, J. W. Porter, and Frank E. Muller-Karger

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Application of an Optimization Algorithm to Satellite Ocean Color Imagery: a Case Study in Southwest Florida Coastal Waters, C. Hu, Z. Lee, Frank E. Muller-Karger, and Kendall L. Carder

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Comparison of Ship and Satellite Bio-Optical Measurements on the Continental Margin of the Ne Gulf of Mexico, C. Hu, Frank E. Muller-Karger, D. C. Biggs, Kendall L. Carder, B. Nababan, D. Nadeau, and J. Vanderbloeman

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Modis Detects Oil Spills in Lake Maracaibo, Venezuela, C. Hu, Frank E. Muller-Karger, C. Taylor, D. Myhre, Brock Murch, A. L. Odriozola, and G. Godoy

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Dispersal of the Suwannee River Plume Over the West Florida Shelf: Simulation and Observation of the Optical and Biochemical Consequences of a Flushing Event, Jason K. Jolliff, John J. Walsh, Ruoying He, Robert H. Weisberg, Antoya Stovall-Leonard, Paula G. Coble, Robyn Conmy, Cynthia A. Heil, Bisman Nababan, Haiying Zhang, Chuanmin Hu, and Frank E. Muller-Karger

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El Niño Tropical Pacific Ocean Surface Current and Temperature Evolution in 2002 and Outlook for Early 2003, Gary S. Lagerloef, Roger Lukas, Fabrice Bonjean, John T. Gunn, Gary T. Mitchum, Mark Bourassa, and Antonio J. Busalacchi

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New Evidence for Enhanced Ocean Primary Production Triggered by Tropical Cyclone, I. Lin, W. Timothy Liu, Chun-Chieh Wu, George T. F. Wong, Chuanmin Hu, Zhiqiang Chen, Wen-Der Liang, Yih Yang, and Kon-Kee Liu

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Development of Small Carbonate Banks on the South Florida Platform Margin: Response to Sea Level and Climate Change, David Mallinson, Albert C. Hine, Pamela Hallock, Stanley D. Locker, Eugene Shinn, David F. Naar, Brian Donahue, and Douglas Weaver

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Use of Fluorescently Labeled Phage in the Detection and Identification of Bacterial Species, P. A. Mosier-Boss, S. H. Lieberman, J. M. Andrews, Forest Rohwer, Linda Wegley, and Mya Breitbart

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Carbonate Systems along Nutrient and Temperature Gradients: Some Sedimentological and Geochemical Constraints, Maria Mutti and Pamela Hallock