Marine Science Faculty Publications

 
This is a select list of works produced by the faculty of the USF College of Marine Science. Materials are included when two conditions are satisfied: 1) the creator approves inclusion and 2) the publisher allows the material to be placed in the repository. Please direct questions or requests to expand the list of materials to Jason Boczar.

Follow

Submissions from 2008

Link

Anisotropic Turbulence and Internal Waves in Stably Stratified Flows (QNSE Theory), Semion Sukoriansky and Boris Galperin

PDF

Estimating Geocenter Variations from a Combination of GRACE and Ocean Model Output, Sean Swenson, D. Chambers, and John Wahr

PDF

Si Cycle in the Cariaco Basin, Venezuela: Seasonal Variability in Silicate Availability and the Si:C:N Composition of Sinking Particles, Robert C. Thunell, Claudia Benitez-Nelson, Frank E. Muller-Karger, Laura Lorenzoni, Mary Scranton, Ramon Varela, Yrene Astor, and Kent A. Fanning

Link

Waves Initiative Within Seacoos, George Voulgaris, Brian K. Haus, Paul Work, Lynn K. Shay, Harvey E. Seim, Robert H. Weisberg, and James R. Nelson

Link

Regional-Scale Seagrass Habitat Mapping in the Wider Caribbean Region Using Landsat Sensors: Applications to Conservation and Ecology, C. C. Wabnitz, S. Andréfouët, D. Torres-Pulliza, Frank E. Muller-Karger, and P. A. Kramer

Link

Satellite Remote Sensing of Surface Oceanic Fronts in Coastal Waters off West–Central Florida, Carrie C. Wall, Frank E. Muller-Karger, Mitchell A. Roffer, Chuanmin M. Hu, Wensheng Yao, and Mark E. Luther

Link

Epilogue to SEACOOS, Robert H. Weisberg

PDF

Hurricane Storm Surge Simulations Comparing Three-Dimensional with Two-Dimensional Formulations Based on an Ivan-like Storm over the Tampa Bay, Florida Region, Robert H. Weisberg and Lianyuan Zheng

PDF

Assessing the Globally Averaged Sea Level Budget on Seasonal to Interannual Timescales, Josh K. Willis, D. Chambers, and R Steven Nerem

PDF

GRACE Observes Small-scale Mass Loss in Greenland, B. Wouters, D. Chambers, and E.J. O. Schrama

Submissions from 2007

Link

High-Resolution In Situ Analysis of Nitrate and Phosphate in the Oligotrophic Ocean, Lori R. Adornato, Eric A. Kaltenbacher, Danielle R. Greenhow, and Robert H. Byrne

Link

Micro- and Macronutrients in the Southeastern Bering Sea: Insight Into Iron-replete and Iron-depleted Regimes, Ana Aguilar-Islas, Matthew Hurst, Kristen N. Buck, Bettina Sohst, Geoffrey Smith, Maeve Lohan, and Kenneth Bruland

PDF

Multivariate Reconstruction of Missing Data in Sea Surface Temperature, Chlorophyll, and Wind Satellite Fields, Aida Alvera-Azcarate, Alexander Barth, J. M. Beckers, and Robert H. Weisberg

Link

Climate Change and Invasibility of the Antarctic Benthos, Richard B. Aronson, Sven Thatje, Andrew Clarke, Lloyd S. Peck, Daniel B. Blake, Cheryl D. Wilga, and Brad A. Seibel

Link

Filtering Inertia-Gravity Waves from the Initial Conditions of the Linear Shallow Water Equations, Alexander Barth, Jean-Marie Beckers, Aida Alvera-Azcarate, and Robert H. Weisberg

Link

Calibration of an In Situ Membrane Inlet Mass Spectrometer for Measurements of Dissolved Gases and Volatile Organics in Seawater, Ryan J. Bell, R. T. Short, Friso H. W. van Amerom, and Robert H. Byrne

PDF

Exploring the Vast Diversity of Marine Viruses, Mya Breitbart, Luke Thompson, Curtis Suttle, and Matthew Sullivan

Link

The Physicochemical Speciation of Dissolved Iron in the Bering Sea, Alaska, Kristen N. Buck and Kenneth W. Bruland

Link

Dissolved Iron Speciation in Two Distinct River Plumes and an Estuary: Implications for Riverine Iron Supply, Kristen N. Buck, Maeve Lohan, Carolyn J. M. Berger, and Kenneth W. Bruland

Link

A Review of Total Dissolved Copper and Its Chemical Speciation in San Francisco Bay, California, Kristen N. Buck, John R.M. Ross, A. Russell Flegal, and Kenneth W. Bruland

PDF

Comment on “Modern-age Buildup of CO2 and Its Effects on Seawater Acidity and Salinity” by Hugo A. Loáiciga, Ken Caldeira, David Archer, James P. Barry, Richard G. Bellerby, Peter G. Brewer, Long Cao, Andrew G. Dickson, Scott C. Doney, Harry Elderfield, Victoria J. Fabry, Richard A. Feely, Jean-Pierre Gattuso, Peter M. Haugan, Ove Hoegh-Guldberg, Atul K. Jain, Joan A. Kleypas, Chris Langdon, James C. Orr, Andy Ridgwell, Christopher L. Sabine, Brad A. Seibel, Yoshihisa Shirayama, Carol Turley, Andrew J. Watson, and Richard E. Zeebe

Link

Development of Stripped-cladding Optical Fiber Sensors for Continuous Monitoring: II: Referencing Method for Spectral Sensing of Environmental Corrosion, Andres M. Cardenas-Valencia, Robert H. Byrne, Melynda Calves, Larry Langebrake, David P. Fries, and Eric T. Steimle

Link

Development of Stripped-cladding Optical Fiber Sensors for Continuous Monitoring: II: Referencing Method for Spectral Sensing of Environmental Corrosion, Andres M. Cardenas-Valencia, Robert H. Byrne, Melynda Calves, Larry Langebrake, David P. Fries, and Eric T. Steimle

Link

Gravimetric Methods – Spacecraft Altimeter Measurements, Don P. Chambers

PDF

Effects of Ice Melting on GRACE Observations of Ocean Mass Trends, Don P. Chambers, Mark E. Tamisiea, R Steven Nerem, and John C. Ries

Link

Colored Dissolved Organic Matter in Tampa Bay, Florida, Zhiqiang Chen, Chuanmin Hu, Robyn N. Conmy, Frank E. Muller-Karger, and Peter Swarzenski

Link

Monitoring Turbidity in Tampa Bay Using MODIS/Aqua 250-m Imagery, Zhiqiang Chen, Chuanmin Hu, and Frank E. Muller-Karger

Link

Remote Sensing of Water Clarity in Tampa Bay, Zhiqiang Chen, Frank E. Muller-Karger, and Chuanmin Hu

Link

Monitoring Turbidity in Tampa Bay Using Modis/Aqua 250-M Imagery, Z. Chen, C. Hu, and Frank E. Muller-Karger

Link

Anomalous Features Observed on Tests of Live Archaiasine Foraminifers from the Florida Keys, USA, Heidi Crevison and Pamela Hallock

Link

Chapter 9 Zooplankton Processes in Arctic and Antarctic Polynyas, D. Deibel and Kendra L. Daly

PDF

Reconstructing Twentieth-Century Sea Surface Temperature Variability in the Southwest Pacific: A Replication Study Using Multiple Coral Sr/Ca Records from New Caledonia, Kristine L. DeLong, Terrence M. Quinn, and Frederick W. Taylor

Link

Depth-related Trends in Metabolism of Benthic and Benthopelagic Deep-sea Fishes, Jeffrey C. Drazen and Brad A. Seibel

Link

Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil, Noah Fierer, Mya Breitbart, James Nulton, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, and Robert Jackson

Link

Lesion Regeneration Rates in Reef-Building Corals Montastraea spp. as Indicators of Colony Condition, Elizabeth M. Fisher, John E. Fauth, Pamela Hallock-Muller, and Cheryl M. Woodley

Link

Ten Commandments for Ecosystem-Based Fisheries Scientists, Robert C. Francis, Mark A. Hixon, M. Elizabeth Clarke, Steven A. Murawski, and Stephen Ralston

Link

On the Critical Richardson Number in Stably Stratified Turbulence, Boris Galperin, Semion Sukoriansky, and Philip S. Anderson

Link

Evidence for Late Pleistocene Ice Stream Activity in the Witch Ground Basin, Central North Sea, from 3D Seismic Reflection Data, A. G. C. Graham, L. Lonergan, and M. S. Stoker

PDF

Long-term and Storm-related Shoreline Change Trends in the Florida Gulf Islands National Seashore, Cheryl J. Hapke and Mark Christiano

PDF

National Assessment of Shoreline Change, Part 4: Historical Coastal Cliff Retreat Along the California Coast, Cheryl J. Hapke and David Reid

PDF

Satellite-Derived Surface Current Divergence in Relation to Tropical Atlantic SST and Wind, Robert W. Helber, Robert H. Weisberg, Fabrice Bonjean, Eric S. Johnson, and Gary S. Lagerloef

Link

Response of Sea Surface Properties to Hurricane Dennis in the Eastern Gulf of Mexico, C. Hu and Frank E. Muller-Karger

Link

Phytoplankton Carbon Fixation Gene (RuBisCO) Transcripts and Air-sea CO2 Flux in the Mississippi River Plume, David E. John, Zhaohui A. Wang, Xuewu Liu, Robert H. Byrne, Jorge E. Corredor, José M. López, Alvaro Cabrera, Deborah A. Bronk, F Robert Tabita, and John H. Paul

Link

Validation and Error Analysis of OSCAR Sea Surface Currents, Eric S. Johnson, Fabrice Bonjean, Gary S. E. Lagerloef, John T. Gunn, and Gary T. Mitchum

PDF

Developing Standards for Dissolved Iron in Seawater, Kenneth Johnson, Virginia Elrod, Steve Fitzwater, Joshua Plant, Edward Boyle, Bridget Bergquist, and Kristen N. Buck

Link

Power Law Rank–abundance Models for Marine Phage Communities, Karl Heinz Karl, Beltran Rodriguez-Brito, Mya Breitbart, David Bangor, Florent Angly, Ben Felts, James Nulton, Forest Rohwer, and Peter Salamon

PDF

Euphotic Zone Depth: Its Derivation and Implication to Ocean-Color Remote Sensing, ZhongPing Lee, Alan Weidemann, John Kindle, Robert Arnone, Kendall L. Carder, and Curtiss Davis

Link

Rectification of the Bias in the Wavelet Power Spectrum, Yonggang Liu, X. San Liang, and Robert H. Weisberg

PDF

Ocean Currents and Sea Surface Heights Estimated Across the West Florida Shelf, Yonggang Liu and Robert H. Weisberg

Link

Current Patterns on the West Florida Shelf from Joint Self-Organizing Map Analyses of Hf Radar and Adcp Data, Yonggang Liu, Robert H. Weisberg, and Lynn K. Shay

Link

Nummulites, A. R. Loeblich Jr. and Pamela Hallock

Link

Macroarray Analysis of Gene Expression in a Marine Pseudotemperate Bacteriophage, Amy Long, Stacey S. Patterson, and John H. Paul

Link

The Influence of Ionic Strength on Yttrium and Rare Earth Element Complexation by Fluoride Ions in NaClO4, NaNO3 and NaCl Solutions at 25 °C, Yu-Ran Luo and Robert H. Byrne

Link

Water Level Observations for Storm Surge, Mark E. Luther, Clifford Ronald Merz, Jeffrey Scudder, Stephen R. Baig, Jennifer Pralgo, Stephen Gill, and Gerald Hovis

Link

On the Attraction of Larval Fishes to Reef Sounds, David A. Mann, Brandon M. Casper, Kelly S. Boyle, and Timothy C. Tricas

Link

Modern Climate Forcing of Terrigenous Deposition in the Tropics (Cariaco Basin, Venezuela), N. C. Martinez, R. W. Murray, R. C. Thunell, L. C. Peterson, Frank E. Muller-Karger, Y. Astor, and R. Varela

Link

Velocity Comparisons from Upward and Downward Acoustic Doppler Current Profilers on the West Florida Shelf, Dennis A. Mayer, Jyotika I. Virmani, and Robert H. Weisberg

Link

Sea Level, M. Merrifield, G. T. Mitchum, S. Gill, and P. Woodworth

Link

Development of a Self-Contained, Satellite Based, Moored Surface Buoy Position Tracking Device, Clifford R. Merz, Robert H. Weisberg, Patrick A. Smith, Jason A. Law, Jeff Donovan, Graham M. Tilbury, Chad Lembke, and Douglass Myhre

Link

A Numerical Simulation of Residual Circulation in Tampa Bay. Part I: Low-frequency Temporal Variations, Steven D. Meyers, Mark E. Luther, Monica Wison, Heather Havens, Amanda Linville, and Kristin Sopkin

Link

Sea Level Rise, Gary T. Mitchum and R. Steven Nerem

Link

Effect of Shoreline Meteorological Measurements on NOAA Buoy Model Prediction of Coastal Air–Sea Gas Transfer, Connie Mizak, Scott Campbell, Kristin Sopkin, Sherryl Gilbert, Mark E. Luther, and Noreen Poor

Link

Size Matters, Sometimes, Steven Murawski

Link

Ten Myths Concerning Ecosystem Approaches to Marine Resource Management, Steven A. Murawski

Link

Biodiversity Loss in the Ocean: How Bad Is It?, Steven Murawski, Richard Methot, and Galen Tromble

Link

Comment on “Estimating Future Sea Level Change from Past Records” by Nils-Axel Mörner, R. S. Nerem, A. Cazenave, Don Chambers, L. Fu, E. W. Leuliette, and Gary T. Mitchum

Link

On the Absorption of Light in the Orinoco River Plume, A. L. Odriozola, R. Varela, C. Hu, Y. Astor, Laura Lorenzoni, and Frank E. Muller-Karger

Link

On the Absorption of Light in the Orinoco River Plume, Ana Lucia Odriozola, Ramon Varela, Chuanmin Hu, Yrene Astor, Laura Lorenzoni, and Frank E. Muller-Karger

Link

Baroclinic Tidal Flows and Inundation Processes in Cook Inlet, Alaska: Numerical Modeling and Satellite Observations, Lie-Yauw Oey, Tal Ezer, Chuanmin Hu, and Frank E. Muller-Karger

Link

Causes of Interestuarine Variability in Bay Anchovy (Anchoa Mitchilli) Salinity at Capture, Ernst B. Peebles, Scott E. Burghart, and David J. Hollander

Link

Spatial and Temporal Chemical Variability in the Hillsborough River System, Lori A. Pillsbury and Robert H. Byrne

Link

Changes in Coral-Reef Structure through the Miocene in the Mediterranean Province: Adaptive Versus Environmental Influence, Luis Pomar and Pamela Hallock

Link

Top-Down Control of Phytoplankton by Oysters in Chesapeake Bay, USA: Reply to Newell et al. (2007), Lawrence R. Pomeroy, Christopher F. D'Elia, and Linda C. Schaffner

Link

Chemical Speciation of Environmentally Significant Metals with Inorganic Ligands Part 2: The Cu2+-OH-, Cl-, CO32-, SO42-, and PO43- systems (IUPAC Technical Report), Kipton J. Powell, Paul L. Brown, Robert H. Byrne, Tamás Gajda, Glenn Hefter, Staffan Sjöberg, and Hans Wanner

Link

Chemical Speciation of Environmentally Significant Metals with Inorganic Ligands Part 2: The Cu2+-OH-, Cl-, CO32-, SO42-, and PO43- Systems (IUPAC Technical Report), Kipton J. Powell, Paul L. Brown, Robert H. Byrne, Tamás Gajda, Glenn Hefter, Staffan Sjöberg, and Hans Wanner

Link

Sorption of Yttrium and Rare Earth Elements by Amorphous Ferric Hydroxide:  Influence of Temperature, Kelly A. Quinn, Robert H. Byrne, and Johan Schijf

Link

Progress on a Gas-accepting Ion Source for Continuous-flow Accelerator Mass Spectrometry, M. L. Roberts, R. J. Schneider, K. F. von Reden, J. S.C. Wills, B. X. Han, J. M. Hayes, B. E. Rosenheim, and W. J. Jenkins

Link

Caribbean Sclerosponge Radiocarbon Measurements Re-interpreted in Terms of U/Th age Models, Brad E. Rosenheim and Peter K. Swart

Link

Constraining Initial 230Th Activity in Incrementally Deposited, Biogenic Aragonite from the Bahamas, Brad E. Rosenheim, Peter K. Swart, and Anton Eisenhauer

Link

Correlation of Trimethylamine Oxide and Habitat Depth within and among Species of Teleost Fish: An Analysis of Causation, Athena L. Samerotte, Jeffrey C. Drazen, Garth L. Brand, Brad A. Seibel, and Paul H. Yancey

Link

Roundtable Discussion Groups Summary Papers: Environmental Bio-Indicators in Coral Reef Ecosystems: the Need to Align Research, Monitoring, and Environmental Regulation, Paul W. Sammarco, Pamela Hallock, Judith C. Lang, and Richard S. LeGore

PDF

Progressive Dolomitization of Florida Limestone Recorded by Alkaline Earth Element Concentrations in Saline, Geothermal, Submarine Springs, Johan Schijf and Robert H. Byrne

Link

Validating a Biogeochemical Watershed Disturbance and Climate Change Proxy: Tampa Bay. FL, Patrick Schwing, E. Martinez, A. J. Pyrtle, and S. Haynes

Link

On the Depth and Scale of Metabolic Rate Variation: Scaling of Oxygen Consumption Rates and Enzymatic Activity in the Class Cephalopoda(Mollusca), Brad A. Seibel

Link

The Rate of Metabolism in Marine Animals: Environmental Constraints, Ecological Demands and Energetic Opportunities, Brad A. Seibel and Jeffrey C. Drazen

Link

Metabolic Temperature Compensation and Coevolution of Locomotory Performance in Pteropod Molluscs, Brad A. Seibel, Agnieszka Dymowska, and Joshua Rosenthal

Link

High-Frequency Radar Mapping of Surface Currents Using Wera, Lynn K. Shay, Jorge Martinez-Pedraja, Thomas M. Cook, Brian K. Haus, and Robert H. Weisberg

PDF

Upper Ocean Response of the Mesoamerican Barrier Reef System to Hurricane Mitch and Coastal Freshwater Inputs: A Study Using Sea-Viewing Wide Field-Of-View Sensor (SEAWIFS) Ocean Color Data and a Nested-Grid Ocean Circulation Model, Jinyu Sheng, Liang Wang, Serge Andrefouet, Chuanmin Hu, Bruce G. Hatcher, Frank E. Muller-Karger, Bjoern Kjerfve, William D. Heyman, and Bo Yang

Link

Cenozoic Antarctic Cryosphere Evolution: Tales from Deep-Sea Sedimentary Records, Amelia E. Shevenell

PDF

Orbital and Atmospheric Forcing of Western Antarctic Peninsula Climate in the Holocene: The TEX86 Paleotemperature Record of Palmer Deep, Amelia E. Shevenell, A. E. Ingalls, and E. W. Domack

Link

Modeling Air/Sea Flux Parameters in a Coastal Area: A Comparative Study of Results from the TOGA COARE Model and the NOAA Buoy Model, Kristin Sopkin, Connie Mizak, Sherryl Gilbert, Vembu Subramaniam, Mark E. Luther, and Noreen Poor

Link

Improvements in Data Management Practices Within West Florida Shelf Coastal Ocean Monitoring and Prediction System, Vembu Subramaniam, Jeff Donovan, Jeremy Atkins, Mark E. Luther, and Robert H. Weisberg

Link

On the Arrest of Inverse Energy Cascade and the Rhines Scale, Semion Sukoriansky, Nadejda Dikovskaya, and Boris Galperin

Link

The Oxygen Isotope Composition of Planktonic Foraminifera from the Cariaco Basin, Venezuela: Seasonal and Interannual Variations, K. Tedesco, R. Thunell, Y. Astor, and Frank E. Muller-Karger

PDF

Particulate Organic Carbon Fluxes Along Upwelling-Dominated Continental Margins: Rates and Mechanisms, Robert C. Thunell, Claudia Benitez-Nelson, Ramon Varela, Yrene Astor, and Frank E. Muller-Karger

Link

The Physiology of Autumn and Winter Krill (Euphausia superba) in the Waters of the Western Antarctic Peninsula Shelf, Joseph J. Torres, Kendra L. Daly, H. R. Harvey, Se-Jong Ju, Langdon B. Quetin, Robin M. Ross, and Scott M. Gallager

PDF

A High Resolution Satellite-only GRACE-based Mean Dynamic Topography of the South Atlantic Ocean, Marcio L. Vianna, Viviane V. Menezes, and D. Chambers

Link

Simultaneous Spectrophotometric Flow-through Measurements of PH, Carbon Dioxide Fugacity, and Total Inorganic Carbon in Seawater, Zhaohui Aleck Wang, Xuewu Liu, Robert H. Byrne, Rik Wanninkhof, Renate E. Bernstein, Eric A. Kaltenbacher, and James Patten

PDF

An Optical Model for Heat and Salt Budget Estimation for Shallow Seas, Hari Warrior and Kendall L. Carder

Link

Multibeam Observations of Mine Burial Near Clearwater, FL, Including Comparisons to Predictions of Wave-Induced Burial, Monica L. Wolfson, David F. Naar, Peter A. Howd, Stanley D. Locker, Brian T. Donahue, Carl T. Friedrichs, Arthur C. Trembanis, Michael D. Richardson, and Thomas F. Wever