Marine Science Faculty Publications
Submissions from 2006
A Simulation of the Hurricane Charley Storm Surge and its Breach of North Captiva Island, Robert H. Weisberg and Lianyuan Zheng
Circulation of Tampa Bay Driven by Buoyancy, Tides, and Winds, as Simulated Using a Finite Volume Coastal Ocean Model, Robert H. Weisberg and Lianyuan Zheng
Hurricane Storm Surge Simulations for Tampa Bay, Robert H. Weisberg and Lianyuan Zheng
Changes in the Circulation of Tampa Bay Due to Hurricane Frances as Recorded by ADCP Measurements and Reproduced with a Numerical Ocean Model, M. Wilson, S. D. Meyers, and Mark E. Luther
FastGroupII: A Web-based Bioinformatics Platform for Analyses of Large 16S rDNA Libraries, Yanan Yu, Mya Breitbart, Pat McNairnie, and Forest Rohwer
Bridging between Seawifs and Modis for Continuity of Chlorophyll-A Concentration Assessments Off Southeastern China, Mingrui Zhang, C. Hu, S. Shang, Frank E. Muller-Karger, Y. Li, M. Dai, B. Huang, X. Ning, and H. Hong
RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses, Tao Zhang, Mya Breitbart, Wah Heng Lee, Jin-Quan Run, Chia Lin Wei, Shirlena Wee Ling Soh, Martin Hibberd, Edison Liu, Forest Rohwer, and Yijun Ruan
Submissions from 2005
Continuous in Situ Determinations of Nitrite at Nanomolar Concentrations, L. R. Adornato, E. A. Kaltenbacher, T. A. Villareal, and R. H. Byrne
Evaluating Marine Ecosystem Restoration Goals for Northern British Columbia, Cameron H. Ainsworth and Tony J. Pitcher
Using Local Ecological Knowledge in Ecosystem Models, Cameron Ainsworth and Tony J. Pitcher
Estimating Illegal, Unreported and Unregulated Catch in British Columbia's Marine Fisheries, C. H. Ainsworth and T. J. Pitcher
Intergenerational Valuation of Fisheries Resources can Justify Long-term Conservation: a Case Study in Atlantic Cod (Gadus morhua), C. H. Ainsworth and U. R. Sumaila
Multi-Scale Remote Sensing of Coral Reefs, S. Andréfouët, E. J. Hochberg, C. Chevillon, Frank E. Muller-Karger, J. C. Brock, and C. Hu
PHACCS, An Online Tool for Estimating the Structure and Diversity of Uncultured Viral Communities Using Metagenomic Information, Florent Angly, Beltran Rodriguez-Brito, David Bangor, Patrick McNairnie, Mya Breitbart, Peter Salamon, Ben Felts, James Nulton, Joseph Mahaffy, and Forest Rohwer
Interannual and Decadal Variability of the Western Pacific Sea Surface Condition for the Years 1787-2000: Reconstruction Based on Stable Isotope Record from a Guam Coral, Ryuji Asami, Tsutomu Yamada, Yasufumi Iryu, Terrence M. Quinn, Christopher P. Meyer, and Gustav Paulay
Fco2 Variability at the Cariaco Tropical Coastal Upwelling Time Series Station, Y. M. Astor, M. I. Scranton, Frank E. Muller-Karger, R. Bohrer, and J. García
Geologic Structure and Hydrodynamics of Egmont Channel: An Anomalous Inlet at the Mouth of Tampa Bay, Florida, Gregory A. Berman, David F. Naar, Albert C. Hine, Gregg R. Brooks, Sarah F. Tebbens, Brian T. Donahue, and Robert Wilson
Eddy Forced Variations in On-And Off-Margin Summertime Circulation along the 1000-M Isobath of the Northern Gulf of Mexico, 2000-2003, and Links with Sperm Whale Distributions along the Middle Slope, D. C. Biggs, A. E. Jochens, M. K. Howard, S. F. Dimarco, K. D. Mullin, R. R. Leben, Frank E. Muller-Karger, and Chuanmin Hu
Microbial Communities Associated with Skeletal Tumors on Porites compressa, Mya Breitbart, Ranjeet Bhagooli, Sean Griffin, Ian Johnston, and Forest Rohwer
Phage Ecology and Bacterial Pathogenesis, Mya Breitbart, F. Rohwer, and S. T. Abedon
Here a Virus, There a Virus, Everywhere the Same Virus?, Mya Breitbart and Forest Rohwer
Method for Discovering Novel DNA Viruses in Blood Using Viral Particle Selection and Shotgun Sequencing, Mya Breitbart and Forest Rohwer
Copper Speciation in San Francisco Bay: A Novel Approach Using Multiple Analytical Windows, Kristen N. Buck and Kenneth W. Bruland
The Dependence of FeIII Hydrolysis on Ionic Strength in NaCl Solutions, Robert H. Byrne, Wensheng Yao, Yu-Ran Luo, and Binyu Wang
Variability of the Sea Surface Temperature around Cuba, S. Cerdeira-Estrada, Frank E. Muller-Karger, and A. Gallegos-García
COMPS, SEACOOS and Near-Shore Waves, Rick Cole, Neil Trenaman, Robert H. Weisberg, and Kevin Amundsen
Where Rivers and Oceans Collide, J. S. Crockett, C. A. Nittrouer, A. S. Ogston, R. W. Sternberg, N. W. Driscoll, J. Babcock, J. D. Milliman, R. Slingerland, D. F. Naar, B. Donahue, J. P. Walsh, W. Dietrich, G. Parker, M. Bera, H. Davies, P. Harris, M. Goni, R. Aller, and J. Aller
A Regional Index of Northeast Pacific Variability Based on Satellite Altimeter Data, Patrick F. Cummins, Gary S. Lagerloef, and Gary Mitchum
Autobiographical Sketches of Women in Oceanography, Kendra L. Daly
Synergistic Effects, Bert G. Drake, Lesley Hughes, E. A. Johnson, Brad A. Seibel, Mark A. Cochrane, Victoria J. Fabry, Daniel Rasse, and Lee Hannah
Auditory Sensitivity of Sergeant Major Damselfish Abudefduf saxatilis from Post-Settlement Juvenile to Adult, Sarah A. Egner and David A. Mann
Do Marine Protected Areas Really Work?, Michael J. Fogarty and Steven A. Murawski
Energy Spectra and Zonal Flows on the β-plane, on a Rotating Sphere, and on Giant Planets, Boris Galperin and Semion Sukoriansky
Global Change and Modern Coral Reefs: New Opportunities to Understand Shallow-Water Carbonate Depositional Processes, Pamela Hallock
The Monterey Peninsula to Morro Bay, Cheryl Hapke
Coastal Change Rates and Patterns: Kaloko-Honokohau National Historical Park, Hawai’i, Cheryl J. Hapke, Rick Gmirkin, and Bruce M. Richmond
Decadal-Scale Analysis of Coastal Landslides Along the Big Sur Coast: Rates and Processes, Cheryl J. Hapke and Krystal R. Green
Rates of Landsliding and Cliff Retreat Along the Big Sur Coast, California—Measuring a Crucial Baseline, Cheryl J. Hapke and Krystal R. Green
Estimation of Regional Material Yield from Coastal Landslides Based on Historical Digital Terrain Modelling, C. J. Hapke
Interannual Temperature Variability in the Tropical Pacific and Lagrangian Heat Transport Pathways, C. L. Holland and Gary T. Mitchum
Absorption and Fluorescence of Chromophoric Dissolved Organic Matter in the Pearl River Estuary, South China, Huasheng Hong, Jingyu Wu, Shaoling Shang, and Chuanmin Hu
Erratum to "Assessment of Estuarine Water-Quality Indicators Using Modis Medium-Resolution Bands: Initial Results from Tampa Bay, Fl [Remote Sensing of Environment 93(2004) 423-441], Chuanmin Hu, Zhiqiang Chen, Tonya D. Clayton, Peter Swarzenski, John C. Brock, and Frank E. Muller-Karger
Red Tide Detection and Tracing Using Modis Fluorescence Data: a Regional Example in Sw Florida Coastal Waters, Chuanmin Hu, Frank E. Muller-Karger, Charles Taylor, Kendall L. Carder, C. Kelble, E. Johns, and C. A. Heil
Mississippi River Water in the Florida Straits and in the Gulf Stream Off Georgia in Summer 2004, Chuanmin Hu, James R. Nelson, Elizabeth Johns, Zhiqiang Chen, Robert H. Weisberg, and Frank E. Muller-Karger
Strange Bedfellows—a Deep-water Hermatypic Coral Reef Superimposed on a Drowned Barrier Island; Southern Pulley Ridge, SW Florida Platform Margin, B. D. Jarrett, A. C. Hine, R. B. Halley, D. F. Naar, S. D. Locker, A. C. Neumann, D. Twichell, C. Hu, B. T. Donahue, W. C. Jaap, D. Palandro, and K. Ciembronowicz
Reduced Horizontal Sea Surface Temperature Gradients under Conditions of Clear Skies and Weak Winds, Kristina B. Katsaros, Alexander Soloviev, Robert H. Weisberg, and Mark E. Luther
Fe and Zn Effects on the Si Cycle and Diatom Community Structure in Two Contrasting High and Low-silicate HNLC Areas, Karine Leblanc, Clinton Hare, P. W. Boyd, Kenneth Bruland, Bettina Sohst, Stuart Pickmere, Maeve Lohan, Kristen N. Buck, Michael Ellwood, and David Hutchins
Diffuse Attenuation Coefficient of Downwelling Irradiance: An Evaluation of Remote Sensing Methods, ZhongPing Lee, Miroslaw Darecki, Kendall L. Carder, Curtiss O. Davis, Dariusz Stramski, and W. Joseph Rhea
Momentum Balance Diagnoses for the West Florida Shelf, Yonggang Liu and Robert H. Weisberg
Patterns of Ocean Current Variability on the West Florida Shelf Using the Self-Organizing Map, Yonggang Liu and Robert H. Weisberg
Effects of Hurricane Charley on Fish Chorusing, James V. Locascio and David A. Mann
Pacific Herring Hearing does not Include Ultrasound, David A. Mann, Arthur N. Popper, and Ben Wilson
Below-Cloud Ammonia Scavenging in Convective Thunderstorms at a Coastal Research Site in Tampa, FL, USA, Constance A. Mizak, Scott Campbell, Mark E. Luther, Robert P. Carnahan, Robert J. Murphy, and Noreen Poor
The Color of the Coastal Ocean and Applications in the Solution of Research and Management Problems, Frank E. Muller-Karger, C. Hu, S. Andréfouët, R. Varela, and R. Thunell
The Antares Observation Network, Frank E. Muller-Karger, Chuamin Hu, Brock Murch, and Charles Taylor
The Importance of Continental Margins in the Global Carbon Cycle, Frank E. Muller-Karger, R. Varela, R. Thunell, R. Luerssen, C. Hu, and John Walsh
Effort Distribution and Catch Patterns Adjacent to Temperate MPAs, Steven A. Murawski, Susan E. Wigley, Michael J. Fogarty, Paul J. Rago, and David G. Mountain
Review of Surf Science: An Introduction to Waves for Surfing, D. F. Naar
Ocean Observatories Initiative Science Plan: Revealing the Secrets of Our Ocean Planet, ORION Executive Steering Committee and Kendra L. Daly
Strategic Management of Marine Ecosystems Using Whole-Ecosystem Simulation Modelling: The ‘Back to the Future’ Policy Approach, Tony J. Pitcher, Cameron H. Ainsworth, Eny A. Buchary, Wai lung Cheung, Robyn Forrest, Nigel Haggan, Hector Lozano, Telmo Morato, and Lyne Morissette
Chemical Speciation of Environmentally Significant Heavy Metals with Inorganic Ligands. Part 1: The Hg2+– Cl–, OH–, CO32–, SO42–, and PO43– Aqueous Systems (IUPAC Technical Report), Kipton J. Powell, Paul L. Brown, Robert H. Byrne, Tamás Gajda, Glenn Hefter, Staffan Sjöberg, and Hans Wanner
Minor and Trace Elements in Sclerosponge Ceratoporella nicholsoni: Biogenic Aragonite Near the Inorganic Endmember?, Brad E. Rosenheim, Peter K. Swart, and Simon R. Thorrold
Salinity Change in the Subtropical Atlantic: Secular Increase and Teleconnections to the North Atlantic Oscillation, Brad E. Rosenheim, Peter K. Swart, Simon R. Thorrold, Anton Eisenhauer, and Philippe Willenz
Simulation-based Investigations of Fishery Changes as Affected by the Scale and Design of Artificial Habitats, M. D. Sayer, S. H. Magill, T. J. Pitcher, L. Morissette, and C. Ainsworth
Post-spawning Egg Care by a Squid, Brad A. Seibel, Bruce H. Robison, and Steven H. Haddock
Hydrographic and Biological Changes in the Taiwan Strait During the 1997–1998 El Niño Winter, S. Shang, C. Zhang, H. Hong, Q. Liu, G. T. F. Wong, C. Hu, and B. Huang
A Spectral-closure Model for Turbulent Flows with Stable Stratification, Semion Sukoriansky and Boris Galperin
Subgrid- and Supergird-scale Parameterization of Turbulence in Quasi-two-dimensional Barotropic Flows and Phenomenon of Negative Viscosity, Semion Sukoriansky and Boris Galperin
‘Application of a New Spectral Theory of Stably Stratified Turbulence to the Atmospheric Boundary Layer Over Sea Ice’, Semion Sukoriansky, Boris Galperin, and Veniamin Perov
A Quasinormal Scale Elimination Model of Turbulent Flows with Stable Stratification, Semion Sukoriansky, Boris Galperin, and Ilya Staroselsky
GGM02 - An Improved Earth Gravity Field Model from GRACE, B. D. Tapley, J. C. Ries, S. Bettadpur, Don P. Chambers, M. Cheng, F. Condi, B. Gunter, Z. Kang, P. Nagel, R. Pastor, T. Pekker, S. Poole, and F. Wang
Photogrammetry, E. Robert Thieler and Cheryl J. Hapke
Relative Humidity Over the West Florida Continental Shelf, Jyotika I. Virmani and Robert H. Weisberg
West Florida Shelf Circulation on Synoptic, Seasonal, and Interannual Time Scales, Robert H. Weisberg, Ruoying He, Yonggang Liu, and Jyotika I. Virmani
Are Midwater Shrimp Trapped in the Craters of Submarine Volcanoes by Hydrothermal Venting?, Karen F. Wishner, Jason R. Graff, Joel W. Martin, S. Carey, H. Sigurdsson, and B. A. Seibel
Submissions from 2004
Use of In Situ and Airborne Reflectance for Scaling-Up Spectral Discrimination of Coral Reef Macroalgae from Species to Communities, Serge Andrefouet, Claude Payri, Eric J. Hochberg, Chuanmin Hu, Marlin J. Atkinson, and Frank E. Muller-Karger
A Hydrous Melting and Fractionation Model for Mid‐ocean Ridge Basalts: Application to the Mid‐Atlantic Ridge near the Azores, P. D. Asimow, Jacqueline E. Dixon, and C. H. Langmuir
Acantharians and Marine Barite, Renate E. Bernstein and Robert H. Byrne
Diversity and Population Structure of a Near–shore Marine–sediment Viral Community, Mya Breitbart, Ben Felts, Scott Kelley, Joseph Mahaffy, James Nulton, Peter Salamon, and Forest Rohwer
Global Distribution of Nearly Identical Phage-encoded DNA Sequences, Mya Breitbart, Jon Miyake, and Forest Rohwer
Phage Community Dynamics in Hot Springs, Mya Breitbart, Linda Wegley, Steven Leeds, Tom Schoenfeld, and Forest Rohwer
In-Situ Measurements of Cu in an Estuarine Environment Using a Portable Spectrophotometric Analysis System, Michael R. Callahan, Eric A. Kaltenbacher, and Robert H. Byrne
Widespread Association of a Rickettsiales‐like Bacterium with Reef‐building Corals, Veronica Casas, David Kline, Linda Wegley, Yanan Yu, Mya Breitbart, and Forest Rohwer
Preliminary Observations of Global Ocean Mass Variations with GRACE, D. Chambers, J. Wahr, and R Steven Nerem
Glass Cplume‐ridge Interaction, and Hydrous Melting along the Galápagos Spreading Center, 90.5°W to 98°W, Buffy Cushman, John Sinton, Garrett Ito, and Jacqueline Eaby Dixon
Chemical and Biological Sensors for Time-Series Research: Current Status and New Directions, Kendra L. Daly, Robert H. Byrne, Andrew G. Dickson, Scott M. Gallager, Mary J. Perry, and Margaret K. Tivey
Comparisons of Morphology and Neritic Distributions of Euphausia Crystallorophias and Euphausia Superba Furcilia during Autumn and Winter West of the Antarctic Peninsula, Kendra L. Daly and Jason J. Zimmerman
Lateral Variation in Upper Mantle Viscosity: Role of Water, Jacqueline E. Dixon, Timothy H. Dixon, D. R. Bell, and Rocco Malservisi
Annual Cycles of Gonadal Development of Six Common Gorgonians from Biscayne National Park, Florida, Usa, K. Fitzsimmons-Sosa, Pamela Hallock, J. Wheaton, K. E. Hackett, and Michael K. Callahan
Mudflats and Mud Suspension Observed from Satellite Data in French Guiana, J. M. Froidefond, F. Lahet, C Hu, D. Doxaran, D. Guiral, M. T. Prost, and J.-F. Ternon
The Ubiquitous Zonal Jets in the Atmospheres of Giant Planets and Earth's Oceans, Boris Galperin, Hideyuki Nakano, Huei-Ping Huang, and Semion Sukoriansky
The Role and the Determination of Residence Proportions for Fisheries Resources Across Political Boundaries: the Georges Bank Example, Stratis Gavaris and Steven Murawski
Evidence for Dissolved Organic Nitrogen and Phosphorus Uptake During a Cyanobacterial Bloom in Florida Bay, P. M. Glibert, Cynthia A. Heil, David J. Hollander, M. Revilla, A. Hoare, J. Alexander, and S. Murasko
Generation, Transport, and Preservation of the Alkenone-Based U37K' Sea Surface Temperature Index in the Water Column and Sediments of the Cariaco Basin (Venezuela), Miguel A. Goni, Mark P. Woodworth, Heather L. Aceves, Robert C. Thunell, Eric Tappa, David Black, Frank E. Muller-Karger, Yrene Astor, and Ramon Varela
Biogeographical Regions of the Tropical and Subtropical Atlantic Ocean Off South America: Classification Based on Pigment (Czcs) and Chlorophyll-A (Seawifs) Variability, A. Gonzalez-Silvera, E. Santamaria-Del-Angel, V. M. Garcia, C. A. Garcia, R. Millán-Nuñez, and Frank E. Muller-Karger
Evolution and Function of Coral Reef Ecosystems, Pamela Hallock
Coral-Reef Risk Assessment from Satellites to Molecules: A Multi-Scale Approach to Environmental Monitoring and Risk Assessment of Coral Reefs, Pamela Hallock, Kwasi H. Barnes, and Elizabeth M. Fisher
The Measurement and Interpretation of Coastal Cliff and Bluff Retreat, Cheryl J. Hapke
Map Showing Estimated Sediment Yield from Coastal Landslides and Active Slope Distribution Along the Big Sur Coast, Monterey and San Luis Obispo Counties, California, Cheryl J. Hapke, Krystal R. Green, and Kate Dallas
