Graduation Year
2019
Document Type
Dissertation
Degree
Ph.D.
Degree Name
Doctor of Philosophy (Ph.D.)
Degree Granting Department
Medical Sciences
Major Professor
Yu Chen, Ph.D.
Committee Member
Robert Deschenes, Ph.D.
Committee Member
Wayne Guida, Ph.D.
Committee Member
Gloria Ferreira, Ph.D.
Committee Member
John Chodera, Ph.D.
Keywords
chemokines, lipid a biosynthesis, molecular docking, X-ray Crystallography, temocillin, ticarcillin, beta lactamase, penicillin binding protein
Abstract
Current research in pharmaceutical development commonly utilizes a profusion of methods in molecular modeling in order to probe intricate biological problems. Many original and promising compounds have been identified and developed by integrating experimental and computational methods. Structural biology utilizes many different research techniques including x-ray crystallography, NMR, and electron microscopy in order to develop molecular models of macromolecules that are of biological interest. Such techniques can be used in conjunction with molecular docking, which utilizes those molecular models in order to target macromolecules of therapeutic interest by computationally analyzing the conformations adopted by ligands upon interaction with a desired binding site and estimating the free energy of binding. This technique allows for the screening of millions of compounds with great variety in terms of structure and chemotype. The initial hits of such drug discovery efforts generally consist of low affinity small molecules, but by developing complex structures of these compounds with the macromolecular target they can be optimized through the addition of functional groups and enlarging the compound structure in order to take advantage of the chemical space surrounding the inhibitor within the binding site, which leads to higher affinity compounds. This is the process of a structure based drug design effort and the work herein utilizes this process in order to develop and optimize small molecule inhibitors that offer the potential to be utilized in battling bacterial resistance to current antibiotics and preventing the metastasis of different cancers.
Scholar Commons Citation
Kroeck, Kyle Galen, "Targeting Bacterial Resistance and Cancer Metastasis: A Structure Based Approach" (2019). USF Tampa Graduate Theses and Dissertations.
https://digitalcommons.usf.edu/etd/8043
