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digital data, functional analysis, computed tomography, three-dimensional models, visualization, phenotype

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Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.


Complete list of authors: Leon P. A. M. Claessens, Philip G. Cox, Xi-Ping Dong,Alistair R. Evans, Peter L. Falkingham, Matt Friedman, Russell J. Garwood, Anjali Goswami, John R. Hutchinson, Nathan S. Jeffery, Zerina Johanson, Renaud Lebrun, Carlos Martínez-Pérez, Jesús Marugán-Lobón, Paul M. O'Higgins, Brian Metscher, Maëva Orliac, Timothy B. Rowe,Martin Rücklin, Marcelo R. Sánchez-Villagra, Neil H. Shubin, Selena Y. Smith, J. Matthias Starck,Chris Stringer, Adam P. Summers, Mark D. Sutton, Stig A. Walsh, Vera Weisbecker, Lawrence M. Witmer, Stephen Wroe, Zongjun Yin, Emily J. Rayfield and Philip C. J. Donoghue

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Proceedings of the Royal Society B, v. 284, issue 1852, art. 20170194

3D Open Data Table S1.pdf (15 kB)
Table S1. Summary of main online repositories for 3D digital morphological data.